Browse Element(s) Details


Os.54445.1.S1_at

Description gb:AK105182.1
DB_XREF= gi:32990391
TID=Os.54445.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.54445 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-105-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-105-G09, full insert sequence.
FL= gb:AK105182.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3231411/11Allene oxide cyclase 3, chloroplast precursor, putative, expressed
LOC_Os01g467601/11Protein phosphatase 2C containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32290OsAffx.13156.1.S1_at11/113+18432209..18434255hypothetical protein
LOC_Os03g32302Os.50166.1.S1_at11/113+18437743..18438522expressed protein
LOC_Os03g32314Os.54445.1.S1_at11/113+18440510..18443273Allene oxide cyclase 3, chloroplast precursor, putative, expressed
LOC_Os03g32314Os.11462.1.S1_at7/113+18440510..18443273Allene oxide cyclase 3, chloroplast precursor, putative, expressed
LOC_Os03g32330OsAffx.25818.3.S1_at3/113+18450708..18456031expressed protein
LOC_Os03g32330Os.56676.1.S1_at1/113+18450708..18456031expressed protein
LOC_Os03g32350Os.27691.1.S1_x_at2/113+18465374..18466609retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32350Os.27691.2.S1_x_at1/113+18465374..18466609retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32360Os.27691.1.S1_x_at2/113+18467074..18468484retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006470biological_processprotein amino acid dephosphorylation
GO:0006970biological_processresponse to osmotic stress
GO:0009269biological_processresponse to desiccation
GO:0009408biological_processresponse to heat
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009738biological_processabscisic acid mediated signaling
GO:0009788biological_processnegative regulation of abscisic acid mediated signaling
GO:0008287cellular_componentprotein serine/threonine phosphatase complex
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005509molecular_functioncalcium ion binding
GO:0015071molecular_functionprotein phosphatase type 2C activity
GO:0046423molecular_functionallene-oxide cyclase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54445.1.S1_at--141--1031Chr03:18442739..18442763 (25 bp)
AGGTAGCAGCATTTAATATGGGCAA
LOC_Os03g32314
Os.54445.1.S1_at--120--272Chr10:16255946..16255966 (21 bp)
ATATGGGCAAATCAGTCTTTAGTAA
NONE
Os.54445.1.S1_at--101--2312Chr03:18442700..18442724 (25 bp)
AAATGGCCAAACTTTACCATGCATC
LOC_Os03g32314
Os.54445.1.S1_at--57--36714Chr09:13617594..13617615 (22 bp)
CTTCAATGCCAAATCTTTTGCCACC
NONE
Os.54445.1.S1_at--572--10631Chr03:18442639..18442663 (25 bp)
TTGCCACCAAAACATTTGCCAAAAA
LOC_Os03g32314
Os.54445.1.S1_at--479--9831Chr03:18442593..18442617 (25 bp)
TAAACATGCCCTTATTATTCTTGGT
LOC_Os03g32314
Os.54445.1.S1_at--62--10211Chr03:18442578..18442602 (25 bp)
TATTCTTGGTCACCACGCTTTTTTA
LOC_Os03g32314
Os.54445.1.S1_at--727--7811Chr03:18442571..18442595 (25 bp)
GGTCACCACGCTTTTTTACTTAGAT
LOC_Os03g32314
Os.54445.1.S1_at--744--5531Chr03:18442344..18442368 (25 bp)
GAAACAACCATTCCGTTCAGTGTGC
LOC_Os03g32314
Os.54445.1.S1_at--1150--9631Chr03:18442328..18442352 (25 bp)
TCAGTGTGCGCGCATATTTTCTCAT
LOC_Os03g32314
Os.54445.1.S1_at--477--6531Chr03:18442294..18442318 (25 bp)
GATTTTACCTCAAACTTCCATTAGC
LOC_Os03g32314
Target Sequence 
AGGTAGCAGCATTTAATATGGGCAAATCAGTCTTTAGTAAAATGGCCAAACTTTACCATGCATCTAAANACCAACTAGCA
AAACTTCAATGCCAAATCTTTTGCCACCAAAACATTTGCCAAAAAATTTGCCATAGCAAATTGATCTAAACATGCCCTTA
TTATTCTTGGTCACCACGCTTTTTTACTTAGATGATGATTAAAATGGGATGGAAGGAGTAATAAAGCATGTGGGAATGAT
TGCATAAAGATTGTGATTAATTGAAAAAAGAAAATATGTGAAAGAGAATGGTTGTAATTGGTTGAAAGGGGAAGATAGAT
GAAAAATAGCTTCATTTTATAACAAATTGTTTTGCTAAAAATATTTTAGATGAAGTTAGTAGTAGAAACGAAACAACCAT
TCCGTTCAGTGTGCGCGCATATTTTCTCATCAAGATTCAGATTTTACCTCAAACTTCCATTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54445.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis