Browse Element(s) Details


Os.11462.1.S1_at

Description gb:AK071443.1
DB_XREF= gi:32981466
TID=Os.11462.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.11462 (NCBI UniGene Cluster)
UG_TITLE=MRNA for allene oxide cyclase (aoc gene)
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023091K18, full insert sequence.
FL= gb:AK060025.1 gb:AK071443.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g323147/11Allene oxide cyclase 3, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32290OsAffx.13156.1.S1_at11/113+18432209..18434255hypothetical protein
LOC_Os03g32302Os.50166.1.S1_at11/113+18437743..18438522expressed protein
LOC_Os03g32314Os.54445.1.S1_at11/113+18440510..18443273Allene oxide cyclase 3, chloroplast precursor, putative, expressed
LOC_Os03g32314Os.11462.1.S1_at7/113+18440510..18443273Allene oxide cyclase 3, chloroplast precursor, putative, expressed
LOC_Os03g32330OsAffx.25818.3.S1_at3/113+18450708..18456031expressed protein
LOC_Os03g32330Os.56676.1.S1_at1/113+18450708..18456031expressed protein
LOC_Os03g32350Os.27691.1.S1_x_at2/113+18465374..18466609retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32350Os.27691.2.S1_x_at1/113+18465374..18466609retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32360Os.27691.1.S1_x_at2/113+18467074..18468484retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009695biological_processjasmonic acid biosynthesis
GO:0046423molecular_functionallene-oxide cyclase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11462.1.S1_at--583--71Chr03:18440882..18440906 (25 bp)
ATTGCTACTGTTACTACTCTGCCAA
LOC_Os03g32314
Os.11462.1.S1_at--439--6391Chr03:18440840..18440864 (25 bp)
GATCGAGCTGCCTGATTAGTTTAGT
LOC_Os03g32314
Os.11462.1.S1_at--208--3951Chr03:18440807..18440831 (25 bp)
CGGCATGTGCGGTGTGTATCGTATC
LOC_Os03g32314
Os.11462.1.S1_at--684--2811Chr03:18440756..18440780 (25 bp)
AAGATATTTGTTTCCTCCCTGCGAT
LOC_Os03g32314
Os.11462.1.S1_at--951--10751Chr03:18440659..18440683 (25 bp)
TTGTGATCCGCAACTACAACGACCG
LOC_Os03g32314
Os.11462.1.S1_at--109--4411Chr03:18440635..18440659 (25 bp)
GCCACTACGGAGAGCTCATGCTATT
LOC_Os03g32314
Os.11462.1.S1_at--688--3112Chr02:8323827..8324228 (25 bp)
AATATATACTCCAGCTCATGTCCAT
NONE
Os.11462.1.S1_at--601--5751NONE
GACGGTCACGCAGATACTCAATGTT
NONE
Os.11462.1.S1_at--604--10031Chr03:18440439..18440463 (25 bp)
TAGACGTCGTTCAGGCACTTGACAT
NONE
Os.11462.1.S1_at--69--7571NONE
GGGCCTATCTTAGGACATGCTCAAT
NONE
Os.11462.1.S1_at--365--111Chr03:18440350..18440374 (25 bp)
ATTAGGAGCCGACTAGTTCAGGGTA
NONE
Target Sequence 
ATTGCTACTGTTACTACTCTGCCAATAATTGATGGAGATGCAGATCGAGCTGCCTGATTAGTTTAGTGTTAATTGCGGCA
TGTGCGGTGTGTATCGTATCACTGATAAGGAAGAGGAATCGAGGACAAGATATTTGTTTCCTCCCTGCGATGAGCCGATG
AACTGATCCGAACAAGAAGAGGCTTCTTGGTAGTAGGTGGATTGGAATATCGAAATGATATGATTGTGATCCGCAACTAC
AACGACCGCCACTACGGAGAGCTCATGCTATTTGTTTGTTTGTTTTTGTACTAGTGCTCAAATATATACTCCAGCTCATG
TCCATGTGTATGTTTTNNTNCTATTATTTTTTTCTCCTGAAAATAAAATATATAACAACGCGCATTGGCATGATGTGAAT
TGGAAACCACCTTAGGACCGACGGTCACGCAGATACTCAATGTTAGACGTCGTTCAGGCACTTGACATGTGGGGCCTATC
TTAGGACATGCTCAATGTTATTGTAGAAACATAAATGTCTTTTGGATTTTTGATTAGGAGCCGACTAGTTCAGGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11462.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis