Browse Element(s) Details


OsAffx.13156.1.S1_at

Description tigr:9631.m03159
TID=OsAffx.13156.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3229011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32270Os.53091.1.S1_at11/113+18405946..18411214hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g32270Os.12141.1.S1_at11/113+18405946..18411214hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g32290OsAffx.13156.1.S1_at11/113+18432209..18434255hypothetical protein
LOC_Os03g32302Os.50166.1.S1_at11/113+18437743..18438522expressed protein
LOC_Os03g32314Os.54445.1.S1_at11/113+18440510..18443273Allene oxide cyclase 3, chloroplast precursor, putative, expressed
LOC_Os03g32314Os.11462.1.S1_at7/113+18440510..18443273Allene oxide cyclase 3, chloroplast precursor, putative, expressed
LOC_Os03g32330OsAffx.25818.3.S1_at3/113+18450708..18456031expressed protein
LOC_Os03g32330Os.56676.1.S1_at1/113+18450708..18456031expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.13156.1.S1_at--953--7911Chr03:18432839..18432860 (22 bp)
GGTTGATAAGCCAGATCTGCCGATG
LOC_Os03g32290
OsAffx.13156.1.S1_at--463--4191Chr03:18432674..18432698 (25 bp)
CCCTCTCCTATCGTTGAACGGAGGA
LOC_Os03g32290
OsAffx.13156.1.S1_at--772--6131Chr03:18432622..18432646 (25 bp)
GAGGGTATGGCTTCAACGATGACCG
LOC_Os03g32290
OsAffx.13156.1.S1_at--1100--8631Chr03:18432428..18432452 (25 bp)
TGGGACTGCTGGTTTTGACAGTGAC
LOC_Os03g32290
OsAffx.13156.1.S1_at--498--10391Chr03:18432416..18432440 (25 bp)
TTTTGACAGTGACGCGCTGACATGC
LOC_Os03g32290
OsAffx.13156.1.S1_at--331--6051Chr03:18432382..18432406 (25 bp)
GAGATTCCTGGCGAAAGCCTAGTTC
LOC_Os03g32290
OsAffx.13156.1.S1_at--162--1651Chr03:18432367..18432391 (25 bp)
AGCCTAGTTCTTTTTAGGACTGACA
LOC_Os03g32290
OsAffx.13156.1.S1_at--1018--951Chr03:18432352..18432376 (25 bp)
AGGACTGACAGTGGCGATGCTCTCG
LOC_Os03g32290
OsAffx.13156.1.S1_at--476--9371Chr03:18432330..18432354 (25 bp)
TCGAGCGCCATAACCCTAATGAGGG
LOC_Os03g32290
OsAffx.13156.1.S1_at--30--3011Chr03:18432313..18432337 (25 bp)
AATGAGGGCACTGCCGTGGTGTTTC
LOC_Os03g32290
OsAffx.13156.1.S1_at--9--1811Chr03:18432288..18432311 (24 bp)
ACCCTCCTTGGTAGATTCCTCAGGA
LOC_Os03g32290
Target Sequence 
GGTTGATAAGCCAGATCTGCCGATGGCGACGGTGGACGTGGACGACGAGGACGTTGCCGGCCCCTCTCCTATCGTTGAAC
GGAGGATGATGTTGTCGGCTATGGTATGGGAGGGAGGGTATGGCTTCAACGATGACCGGGGTGGGACTGCTGGTTTTGAC
AGTGACGCGCTGACATGCGAGGGAAGAGAGATTCCTGGCGAAAGCCTAGTTCTTTTTAGGACTGACAGTGGCGATGCTCT
CGAGCGCCATAACCCTAATGAGGGCACTGCCGTGGTGTTTCCACCCTCCTTGGTAGATTCCTCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.13156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis