Browse Element(s) Details


Os.56676.1.S1_at

Description gb:AK110284.1
DB_XREF= gi:32995493
TID=Os.56676.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56676 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-163-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-163-E09, full insert sequence.
FL= gb:AK110284.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g323301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32290OsAffx.13156.1.S1_at11/113+18432209..18434255hypothetical protein
LOC_Os03g32302Os.50166.1.S1_at11/113+18437743..18438522expressed protein
LOC_Os03g32314Os.54445.1.S1_at11/113+18440510..18443273Allene oxide cyclase 3, chloroplast precursor, putative, expressed
LOC_Os03g32314Os.11462.1.S1_at7/113+18440510..18443273Allene oxide cyclase 3, chloroplast precursor, putative, expressed
LOC_Os03g32330OsAffx.25818.3.S1_at3/113+18450708..18456031expressed protein
LOC_Os03g32330Os.56676.1.S1_at1/113+18450708..18456031expressed protein
LOC_Os03g32350Os.27691.1.S1_x_at2/113+18465374..18466609retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32350Os.27691.2.S1_x_at1/113+18465374..18466609retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32360Os.27691.1.S1_x_at2/113+18467074..18468484retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32370OsAffx.31869.4.S1_x_at11/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.4.S1_at11/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.3.S1_x_at6/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.3.S1_s_at4/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32370OsAffx.31869.5.S1_x_at2/113+18471271..18472410retrotransposon protein, putative, unclassified
LOC_Os03g32380Os.46610.1.A1_x_at4/113+18474294..18478797retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g32380OsAffx.29073.1.S1_x_at3/113+18474294..18478797retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56676.1.S1_at--203--5971NONE
GAGAAAGGTCACGAGCCGCTAGGTT
NONE
Os.56676.1.S1_at--721--8631NONE
TGGGACCCATAGTACATCATCCATC
NONE
Os.56676.1.S1_at--719--9231NONE
TCCAGGTTTTGCTGCATCTGACCAA
NONE
Os.56676.1.S1_at--207--8911NONE
TGACCAAAGCCTCTCAGCAGATAGC
NONE
Os.56676.1.S1_at--904--6851Chr03:18451979..18452001 (22 bp)
GTTTGACTTCCTTCATGTGATGGTA
LOC_Os03g32330
Os.56676.1.S1_at--1001--211NONE
ATTTGTGCACCTTCAATGTCAGAGT
NONE
Os.56676.1.S1_at--766--7331NONE
GTGCACGTGCATTGGCAAGGCCCAT
NONE
Os.56676.1.S1_at--413--10851NONE
TTGGTCGGAACATTTGGTGCTCGCC
NONE
Os.56676.1.S1_at--558--5071NONE
GCAGCGGCATCTTTTGGTCGTTGGC
NONE
Os.56676.1.S1_at--1115--5391NONE
GAAGCTCAAGCTGGCTGCACGGCAG
NONE
Os.56676.1.S1_at--80--3051NONE
AATCGCTGCTGGTTGGCCGAAGACC
NONE
Target Sequence 
GAGAAAGGTCACGAGCCGCTAGGTTGATATGGGGCTTGCTGAGCTGTGGGCTGGGTTGGGACCCATAGTACATCATCCAT
CTCCTGCGGGACAGAGCAAACGCACCCGCTGCTCGTGTTTGTTGTATGGGCAGCACTTGCCATGTGCAGGGCAGATGCGA
GCTCTGCTGGCTTCGGTGGAAGGCACATGATTGTGTTGGCATGTTGAATGAGCACTGTTCGGAGGGGCTGCAAGTATCCA
GGTTTTGCTGCATCTGACCAAAGCCTCTCAGCAGATAGCTGACAAGATATTGTTTGACTTCCTTCATGTGATGGTAATTT
GTGCACCTTCAATGTCAGAGTGCGCTGTGTGCACGTGCATTGGCAAGGCCCATGGATTCTCTTCCCCCGTTGGTCGGAAC
ATTTGGTGCTCGCCTCAAGCACTATCCCGGGACAATATTTATGCAGCGGCATCTTTTGGTCGTTGGCTGTTGTGTTGAAG
CTCAAGCTGGCTGCACGGCAGTAGGTCACAAGTGCATGGGTGCACAGTGCCAACCAATCGCTGCTGGTTGGCCGAAGACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis