Browse Element(s) Details


Os.50166.1.S1_at

Description gb:AK119977.1
DB_XREF= gi:37989600
TID=Os.50166.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50166 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-F03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-F03, full insert sequence.
FL= gb:AK119977.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3230211/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g32290OsAffx.13156.1.S1_at11/113+18432209..18434255hypothetical protein
LOC_Os03g32302Os.50166.1.S1_at11/113+18437743..18438522expressed protein
LOC_Os03g32314Os.54445.1.S1_at11/113+18440510..18443273Allene oxide cyclase 3, chloroplast precursor, putative, expressed
LOC_Os03g32314Os.11462.1.S1_at7/113+18440510..18443273Allene oxide cyclase 3, chloroplast precursor, putative, expressed
LOC_Os03g32330OsAffx.25818.3.S1_at3/113+18450708..18456031expressed protein
LOC_Os03g32330Os.56676.1.S1_at1/113+18450708..18456031expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50166.1.S1_at--1084--10291Chr03:18437922..18437946 (25 bp)
TTTCGCGCGTCGAGAATCTCCTGCC
LOC_Os03g32302
Os.50166.1.S1_at--361--4151Chr03:18438013..18438037 (25 bp)
CGCGTGCCGTCGAGCTTGTCATCCT
LOC_Os03g32302
Os.50166.1.S1_at--316--4391Chr03:18438062..18438086 (25 bp)
CCAAGGCCAAATCCGGCCAGATCTG
LOC_Os03g32302
Os.50166.1.S1_at--266--4191Chr03:18438302..18438326 (25 bp)
CCCTGCCGCTGCTTGGGATGCTTGG
LOC_Os03g32302
Os.50166.1.S1_at--563--7732Chr03:18438367..18438391 (25 bp)
GGTGGGTCCCACTATAAGCTACTTG
LOC_Os03g32302
Os.50166.1.S1_at--1092--2691Chr03:18438382..18438406 (25 bp)
AAGCTACTTGTAAGGTCACTTGCAT
LOC_Os03g32302
Os.50166.1.S1_at--417--7071Chr03:18438391..18438415 (25 bp)
GTAAGGTCACTTGCATTGTAGATCA
LOC_Os03g32302
Os.50166.1.S1_at--951--9711Chr03:18438413..18438437 (25 bp)
TCAAGTGACTTGAGCCTAGCCCCAA
LOC_Os03g32302
Os.50166.1.S1_at--424--2671Chr03:18438436..18438460 (25 bp)
AAGCCCAGGCGCACCATTTCTGATG
LOC_Os03g32302
Os.50166.1.S1_at--559--3372Chr03:18438447..18438471 (25 bp)
CACCATTTCTGATGGCGCACTGTGA
LOC_Os03g32302
Os.50166.1.S1_at--805--8391Chr03:18438460..18438484 (25 bp)
GGCGCACTGTGAGATGTATGGAAAC
LOC_Os03g32302
Target Sequence 
TTTCGCGCGTCGAGAATCTCCTGCCGTGCCGTCCCCCGCCGGTTGGAGGAGAGATGGCGCCGTTGTCCCCGCCACCATCG
AGCTTGTCGTCCGCGTGCCGTCGAGCTTGTCATCCTCGCGCCGCCCGTCGCCGTCGCTGCCCAAGGCCAAATCCGGCCAG
ATCTGGCCGTCCCGCCACCGCTCCGCCCTGCCACCGCCCCGCTGCAACGCCGCTCGACGCCCGGCGCCGTCGCCGCTTGG
CTCGCCGCTGCTCCGCCCGGCTGCCCCGCCGCCGCTTGGGCCGCTCGGCACCGTCGCCTCGCCGCCGCCGCTTGGCTCGG
CACCGTCACCCCGCCGCTTGGCTCGCCACCGCTCTGCCCGGCCACCTCTTCGCCTGGCTGCCCTGCCGCTGCTTGGGATG
CTTGGGAGAGAGAGGGGAGGGAAAGTGAAAAGGAAAAAATGTTATGGTGGGTCCCACTATAAGCTACTTGTAAGGTCACT
TGCATTGTAGATCAAGTGACTTGAGCCTAGCCCCAAGCCCAGGCGCACCATTTCTGATGGCGCACTGTGAGATGTATGGA
AAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50166.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis