Browse Element(s) Details


Os.27768.1.S1_at

Description gb:AK067917.1
DB_XREF= gi:32977935
TID=Os.27768.1
CNT=10
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.27768 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013123E21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123E21, full insert sequence.
FL= gb:AK058337.1 gb:AK067917.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0462011/11Membrane associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04570OsAffx.29031.2.S1_at11/118+2274231..2276255hypothetical protein
LOC_Os08g04580OsAffx.29031.1.S1_at11/118+2277339..2279865csAtPR5, putative, expressed
LOC_Os08g04590OsAffx.16827.1.S1_at11/118+2283046..2287271csAtPR5, putative
LOC_Os08g04600NANA8+2288082..2288480hypothetical protein
LOC_Os08g04610OsAffx.5703.1.S1_at11/118+2290348..2291032hypothetical protein
LOC_Os08g04620Os.27768.1.S1_at11/118+2299465..2302161Membrane associated protein, putative, expressed
LOC_Os08g04620Os.34006.1.S1_x_at1/118+2299465..2302161Membrane associated protein, putative, expressed
LOC_Os08g04630Os.34139.1.S1_at6/118+2304024..2308749EF hand family protein, expressed
LOC_Os08g04640OsAffx.29032.1.S1_at11/118+2314093..2314650expressed protein
LOC_Os08g04650Os.53290.1.S1_at11/118+2316203..2317294pectinesterase inhibitor domain containing protein, expressed
LOC_Os08g04660OsAffx.16828.1.S1_at11/118+2323968..2324393hypothetical protein
LOC_Os08g04670OsAffx.5705.1.S1_at11/118+2325991..2326566expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006970biological_processresponse to osmotic stress
GO:0005886cellular_componentplasma membrane
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27768.1.S1_at--1087--8811Chr08:2301382..2301406 (25 bp)
TGTTGTATTCTTGGACGCTGAGCGT
LOC_Os08g04620
Os.27768.1.S1_at--333--3431Chr08:2301534..2301558 (25 bp)
CAGAGGCAGCACTTGAAGCACGCAA
LOC_Os08g04620
Os.27768.1.S1_at--485--5391Chr08:2301548..2301572 (25 bp)
GAAGCACGCAAGAAACCTCCAGAGG
LOC_Os08g04620
Os.27768.1.S1_at--65--4211Chr08:2301582..2301606 (25 bp)
CCCGCATTGTTGGTGAAGGCCTTGT
LOC_Os08g04620
Os.27768.1.S1_at--353--1351Chr08:2301740..2301764 (25 bp)
AGAGAGATACCTTGCTCGTCAGCAG
LOC_Os08g04620
Os.27768.1.S1_at--140--8831Chr08:2301776..2301800 (25 bp)
TGATTCAGCGTAGACACGGCACCAT
LOC_Os08g04620
Os.27768.1.S1_at--521--5491Chr08:2301824..2301848 (25 bp)
GAACATATCGTTTTATCGTCGCCAC
LOC_Os08g04620
Os.27768.1.S1_at--29--571Chr08:2301851..2301875 (25 bp)
ATCCTTCTGTCCATGGTTTTTTCAG
LOC_Os08g04620
Os.27768.1.S1_at--96--10271Chr08:2301927..2301951 (25 bp)
TTTGAGCTTCATGCTGCACTTCATT
LOC_Os08g04620
Os.27768.1.S1_at--88--3311Chr08:2301943..2301967 (25 bp)
CACTTCATTCCTGGGTCTACATGTA
LOC_Os08g04620
Os.27768.1.S1_at--938--2991Chr08:2302088..2302112 (25 bp)
AATGTTGTCTGAACGTGCTCTTCAA
LOC_Os08g04620
Target Sequence 
TGTTGTATTCTTGGACGCTGAGCGTCAAACCCCACAAATGGACAAGCTCAAGCGCCAGCTTGCTGAAGCAGAGGCAGCAC
TTGAAGCACGCAAGAAACCTCCAGAGGACACCGGCCCCCGCATTGTTGGTGAAGGCCTTGTAATTGATGAATGGAAGGAG
CGAAGAGAGAGATACCTTGCTCGTCAGCAGATTGAAGGGGTTGATTCAGCGTAGACACGGCACCATGAACTGTAAACCAT
TGGTTGCTTGAACATATCGTTTTATCGTCGCCACACATCCTTCTGTCCATGGTTTTTTCAGTTTTTACAAAGGTTCTGCT
TGGAACAAGAGTGAGGCTTTGTGTAATTAGGATTTGAGCTTCATGCTGCACTTCATTCCTGGGTCTACATGTAGATAGCC
AGTCACTGCTTGATAATAATATTTTCTATGCTAGATCATGTACTTGGGGTTGTGGACTTAGACGTGTGGATGCGATACAT
TTCTTAGGTGATGTTCCCATCAATATTGAATGTAATGTTGTCTGAACGTGCTCTTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27768.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis