Browse Element(s) Details


OsAffx.29031.1.S1_at

Description tigr:9636.m00383
TID=OsAffx.29031.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0458011/11csAtPR5, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04550OsAffx.29030.1.S1_at11/118+2259647..2260465hypothetical protein
LOC_Os08g04560OsAffx.5702.1.S1_s_at11/118+2262107..2264224Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os08g04560Os.27876.1.S1_x_at3/118+2262107..2264224Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os08g04570OsAffx.29031.2.S1_at11/118+2274231..2276255hypothetical protein
LOC_Os08g04580OsAffx.29031.1.S1_at11/118+2277339..2279865csAtPR5, putative, expressed
LOC_Os08g04590OsAffx.16827.1.S1_at11/118+2283046..2287271csAtPR5, putative
LOC_Os08g04600NANA8+2288082..2288480hypothetical protein
LOC_Os08g04610OsAffx.5703.1.S1_at11/118+2290348..2291032hypothetical protein
LOC_Os08g04620Os.27768.1.S1_at11/118+2299465..2302161Membrane associated protein, putative, expressed
LOC_Os08g04620Os.34006.1.S1_x_at1/118+2299465..2302161Membrane associated protein, putative, expressed
LOC_Os08g04630Os.34139.1.S1_at6/118+2304024..2308749EF hand family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29031.1.S1_at--399--3191Chr08:2277887..2277911 (25 bp)
CAATATCTGTGCGTGTCATTCGTGG
LOC_Os08g04580
OsAffx.29031.1.S1_at--54--7831Chr08:2277840..2277864 (25 bp)
GGTCAGTTTGCTGCATATACCACTG
LOC_Os08g04580
OsAffx.29031.1.S1_at--154--311Chr08:2277824..2277848 (25 bp)
ATACCACTGGTGTCAGATTCAGGCA
LOC_Os08g04580
OsAffx.29031.1.S1_at--334--6571Chr08:2277809..2277833 (25 bp)
GATTCAGGCATTTGGCCTCTGAAGA
LOC_Os08g04580
OsAffx.29031.1.S1_at--1055--4451Chr08:2277795..2277819 (25 bp)
GCCTCTGAAGACATCCTAGCTGGAA
LOC_Os08g04580
OsAffx.29031.1.S1_at--148--851Chr08:2277704..2277728 (25 bp)
ATGGCACGATTGAGCTTTCACGGCG
LOC_Os08g04580
OsAffx.29031.1.S1_at--607--7591Chr08:2277635..2277659 (25 bp)
GGGCATGGGAGCTCGTTGATCATAA
LOC_Os08g04580
OsAffx.29031.1.S1_at--415--3611Chr08:2277544..2277568 (25 bp)
CATTGGCTTCTGTCTGCTTGAAGTT
LOC_Os08g04580
OsAffx.29031.1.S1_at--277--10831Chr08:2277511..2277535 (25 bp)
TTGGTCGCTCATTTCGGAGAATCCA
LOC_Os08g04580
OsAffx.29031.1.S1_at--731--2611Chr08:2277492..2277516 (25 bp)
AATCCAGTTCTTGCTAAATCGGTTC
LOC_Os08g04580
OsAffx.29031.1.S1_at--941--4871Chr08:2277382..2277406 (25 bp)
GCTTTTGTAAGATTTGTGGCCGATA
LOC_Os08g04580
Target Sequence 
CAATATCTGTGCGTGTCATTCGTGGGTCATGGCCTGATGGTTTTCATGGTCAGTTTGCTGCATATACCACTGGTGTCAGA
TTCAGGCATTTGGCCTCTGAAGACATCCTAGCTGGAATTGAACTTGAGAAAATAGTCCTGCTTGATTCTAGAGGTGATCA
GAACGTAGTAACTGTCAGTGGTGATGGCACGATTGAGCTTTCACGGCGTGTTGTTTCTGTTGAGAAGGTTGGAAAGCTGA
AGGTTCTTGTCAGGGCATGGGAGCTCGTTGATCATAACAATGTCGTGGAACAAGTGAAGGTTTTCACACCATTAGAAGCT
GGCTTGAGCAATGGTGAGCTAGACATTGGCTTCTGTCTGCTTGAAGTTAGTGTAGCTTGGTCGCTCATTTCGGAGAATCC
AGTTCTTGCTAAATCGGTTCTGTAGTACTGGAAAATATGCATGGTCAGGCATCGGAATGGTTGTGAAACGTGAACTGGTG
ATTAATTGTTAGCATGGTTGATGCAGCTTTTGTAAGATTTGTGGCCGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29031.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis