Browse Element(s) Details


OsAffx.5702.1.S1_s_at

Description tigr:9636.m00381
TID=OsAffx.5702.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=aromatic-l-amino-acid decarboxylase (ec 4.1.1.28) (aadc) (dopadecarboxylase) (tryptophan decarboxylase)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0456011/11Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04540Os.27876.1.S1_x_at11/118+2249663..2251528Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os08g04550OsAffx.29030.1.S1_at11/118+2259647..2260465hypothetical protein
LOC_Os08g04560OsAffx.5702.1.S1_s_at11/118+2262107..2264224Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os08g04560Os.27876.1.S1_x_at3/118+2262107..2264224Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os08g04570OsAffx.29031.2.S1_at11/118+2274231..2276255hypothetical protein
LOC_Os08g04580OsAffx.29031.1.S1_at11/118+2277339..2279865csAtPR5, putative, expressed
LOC_Os08g04590OsAffx.16827.1.S1_at11/118+2283046..2287271csAtPR5, putative
LOC_Os08g04600NANA8+2288082..2288480hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006520biological_processamino acid metabolism
GO:0004837molecular_functiontyrosine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5702.1.S1_s_at--628--9351Chr08:2262525..2262549 (25 bp)
TCGACGGCGACAGTGTAAAGCCACT
LOC_Os08g04560
OsAffx.5702.1.S1_s_at--436--1971Chr08:2262503..2262527 (25 bp)
ACTGTTATTTGCTGTGTCGTGTCCG
LOC_Os08g04560
OsAffx.5702.1.S1_s_at--1026--7191Chr08:2262488..2262512 (25 bp)
GTCGTGTCCGTTCGATACATGGATT
LOC_Os08g04560
OsAffx.5702.1.S1_s_at--1089--8811Chr08:2262464..2262488 (25 bp)
TGATTAATTGTTTACTGGTCGCAGT
LOC_Os08g04560
OsAffx.5702.1.S1_s_at--820--131Chr08:2262428..2262452 (25 bp)
ATTAATGGCGACAACGAGAGGTGCG
LOC_Os08g04560
OsAffx.5702.1.S1_s_at--1053--3071Chr08:2262397..2262421 (25 bp)
AATAAATACTCTCTCCACGTAGGCA
LOC_Os08g04560
OsAffx.5702.1.S1_s_at--1008--9511Chr08:2262388..2262412 (25 bp)
TCTCTCCACGTAGGCAGTGTGTGTG
LOC_Os08g04560
OsAffx.5702.1.S1_s_at--464--6551Chr08:2262360..2262384 (25 bp)
GATTATATTCATACTGTGCATTCAA
LOC_Os08g04560
OsAffx.5702.1.S1_s_at--575--2291Chr08:2262314..2262338 (25 bp)
AAATGTTGGGCTTTCATCTTCTTCT
LOC_Os08g04560
OsAffx.5702.1.S1_s_at--249--3471Chr08:2262199..2262223 (25 bp)
CAGGTGATTTGTTTGGCCTTAATTG
LOC_Os08g04560
OsAffx.5702.1.S1_s_at--1124--3891Chr08:2262153..2262177 (25 bp)
CTGGTTGTTGGTGTGTTGAGCTATA
LOC_Os08g04560
Target Sequence 
TCGACGGCGACAGTGTAAAGCCACTGTTATTTGCTGTGTCGTGTCCGTTCGATACATGGATTGATTAATTGTTTACTGGT
CGCAGTTGGTAGAAGTAATTAATGGCGACAACGAGAGGTGCGTGGAATAATAAATACTCTCTCCACGTAGGCAGTGTGTG
TGTGTGATTATATTCATACTGTGCATTCAAAATTACTATGGTCCATCATATAAATGTTGGGCTTTCATCTTCTTCTTTTT
TTTGGGTAAGGTTCTTTTTCTTTTTTGTTACTTGTATACCAGCAAGAAACATGTCATAAGTCATGTGTAGTACGGGTAAA
AAGGAACAGGTGATTTGTTTGGCCTTAATTGTATATCAAACTTTTGAGTAAGCTGGTTGTTGGTGTGTTGAGCTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5702.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis