Browse Element(s) Details


Os.27778.1.S1_a_at

Description gb:AY396568.1
DB_XREF= gi:37622420
GEN=EIN2
TID=Os.27778.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27778 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) EIN2 (EIN2) mRNA, complete cds.
PROD=EIN2
FL= gb:AY396568.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0613011/11Natural resistance-associated macrophage protein, expressed
LOC_Os07g061908/11Peroxidase family protein, expressed
LOC_Os07g063002/11Peroxidase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g06110OsAffx.16451.1.A1_x_at5/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.16451.1.A1_at2/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110Os.45161.1.A1_x_at2/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.8279.1.S1_at1/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.8201.1.S1_x_at1/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06110OsAffx.22699.1.S1_x_at1/117+2958537..2965499retrotransposon protein, putative, unclassified
LOC_Os07g06120NANA7+2966018..2969022hypothetical protein
LOC_Os07g06130Os.27778.1.S1_a_at11/117+2982728..2989439Natural resistance-associated macrophage protein, expressed
LOC_Os07g06139OsAffx.28302.1.S1_at11/117+2990759..2991843hypothetical protein
LOC_Os07g06148NANA7+2992340..2992636hypothetical protein
LOC_Os07g06157NANA7+2994327..2995794hypothetical protein
LOC_Os07g06166NANA7+3000757..3001278hypothetical protein
LOC_Os07g06175OsAffx.28306.1.S1_x_at11/117+3009772..3012463Peroxidase family protein
LOC_Os07g06175OsAffx.28306.1.S1_at11/117+3009772..3012463Peroxidase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006828biological_processmanganese ion transport
GO:0006875biological_processmetal ion homeostasis
GO:0006979biological_processresponse to oxidative stress
GO:0008219biological_processcell death
GO:0009269biological_processresponse to desiccation
GO:0009408biological_processresponse to heat
GO:0009409biological_processresponse to cold
GO:0009723biological_processresponse to ethylene stimulus
GO:0009725biological_processresponse to hormone stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009789biological_processpositive regulation of abscisic acid mediated signaling
GO:0009871biological_processjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0009926biological_processauxin polar transport
GO:0010182biological_processsugar mediated signaling
GO:0015691biological_processcadmium ion transport
GO:0015692biological_processlead ion transport
GO:0030001biological_processmetal ion transport
GO:0042538biological_processhyperosmotic salinity response
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0005384molecular_functionmanganese ion transporter activity
GO:0015103molecular_functioninorganic anion transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27778.1.S1_a_at--298--8193Chr07:3067471..3067495 (25 bp)
GGAAGGAGAACCTGGCCTCCGTGCT
LOC_Os07g06300
Os.27778.1.S1_a_at--176--4473Chr07:3067485..3067509 (25 bp)
GCCTCCGTGCTGAAGCGATACAAGC
LOC_Os07g06300
Os.27778.1.S1_a_at--435--5073Chr07:3067551..3067575 (25 bp)
GCAGCGTGATCCTGTCGCGTTTTAG
NONE
Os.27778.1.S1_a_at--1129--1653Chr07:3067636..3067660 (25 bp)
AGCCCTGGATTTTTTCGTTGCACAA
NONE
Os.27778.1.S1_a_at--705--10733Chr07:3067653..3067677 (25 bp)
TTGCACAACGTTTGCAGGGACCTGA
NONE
Os.27778.1.S1_a_at--491--933Chr07:3067677..3067701 (25 bp)
AGGAATTGGCCAACACTTCTGGTCC
NONE
Os.27778.1.S1_a_at--1021--7233Chr07:3067698..3067722 (25 bp)
GTCCCTTCCATCATATTTCGTTTTT
NONE
Os.27778.1.S1_a_at--141--2973Chr07:3067774..3067798 (25 bp)
AATGGTAACTGTTCATGTGCCAGAA
NONE
Os.27778.1.S1_a_at--732--3433Chr07:3067821..3067845 (25 bp)
CAGATGTAGTCAGCTGATGCACCAT
NONE
Os.27778.1.S1_a_at--93--6833Chr07:3067852..3067876 (25 bp)
GTTTAGTCTCTGCATTTTAACCTTT
NONE
Os.27778.1.S1_a_at--1050--653Chr07:3067902..3067926 (25 bp)
ATGAATGCCCTGTGTAATCTCTCTT
NONE
Target Sequence 
GGAAGGAGAACCTGGCCTCCGTGCTGAAGCGATACAAGCGGAGGCTCTCGAGCAAGGGACAACAATAATAAGGCATCTGG
GCAGCGTGATCCTGTCGCGTTTTAGGGGGACTTTGACCATTGTTCTTCAAGGATGGCAGCCAGCCATGGTGGCTTGCCCT
CCCTGAGCCCTGGATTTTTTCGTTGCACAACGTTTGCAGGGACCTGAGGAATTGGCCAACACTTCTGGTCCCTTCCATCA
TATTTCGTTTTTTTTTGTTTCTTTCTTGTTTTTTTTTTTTTTTTTGCATGTGATGTGTTGTATAATGGTAACTGTTCATG
TGCCAGAAGAACAACCACCAAAATGTACAACAGATGTAGTCAGCTGATGCACCATTGTAAAGTTTAGTCTCTGCATTTTA
ACCTTTTTTTTGGGGGTCATTGACAAACTGAATGAATGCCCTGTGTAATCTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27778.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis