Browse Element(s) Details


Os.27794.1.S1_at

Description gb:AK071447.1
DB_XREF= gi:32981470
TID=Os.27794.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27794 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023097D21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023097D21, full insert sequence.
FL= gb:AK071447.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g2719011/11Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g273403/11Terpene synthase family, metal binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g27130NANA4+15845197..15847989retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g27140NANA4+15851563..15853448retrotransposon protein, putative, unclassified
LOC_Os04g27150NANA4+15857239..15858626expressed protein
LOC_Os04g27160OsAffx.1300.1.S1_at2/114+15859977..15861221hypothetical protein
LOC_Os04g27160OsAffx.9532.1.S1_x_at1/114+15859977..15861221hypothetical protein
LOC_Os04g27170NANA4+15861934..15863222retrotransposon protein, putative, unclassified
LOC_Os04g27180OsAffx.7693.1.S1_x_at1/114+15866053..15866316hypothetical protein
LOC_Os04g27190Os.52600.1.S1_at11/114+15870565..15880857Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27190Os.27794.1.S1_at11/114+15870565..15880857Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os04g27200NANA4+15884515..15884889hypothetical protein
LOC_Os04g27210NANA4+15893468..15896923transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g27220NANA4+15897965..15901159transposon protein, putative, unclassified
LOC_Os04g27230NANA4+15901799..15907954retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016106biological_processsesquiterpenoid biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27794.1.S1_at--979--2852Chr04:15965097..15965121 (25 bp)
AAGTGCCGTTATAGCTTGTGCAAAG
LOC_Os04g27340
Os.27794.1.S1_at--378--8051Chr04:15871052..15871076 (25 bp)
GGAGATGCCGCAAACACAGTAGAGT
LOC_Os04g27190
Os.27794.1.S1_at--1098--6752Chr04:15964446..15964470 (25 bp)
GTTACAAGCGAAGTTGCCTTAGACA
LOC_Os04g27340
Os.27794.1.S1_at--41--5252Chr04:15870945..15870969 (25 bp)
GAATCAGGTTCGTTGTGATCATCAA
LOC_Os04g27190
Os.27794.1.S1_at--561--2331Chr04:15870921..15870945 (25 bp)
AAAGCAGTTCCATGTGGTGCAACGA
LOC_Os04g27190
Os.27794.1.S1_at--426--3111Chr04:15870890..15870914 (25 bp)
AATTTGGCCGTAGCAGTGCCATTCT
LOC_Os04g27190
Os.27794.1.S1_at--745--7611Chr04:15870809..15870833 (25 bp)
GGGAATCTGTTTGTGAATCCTGTCA
LOC_Os04g27190
Os.27794.1.S1_at--1065--3031Chr04:15870794..15870818 (25 bp)
AATCCTGTCACCCTTTAGAACTGAG
LOC_Os04g27190
Os.27794.1.S1_at--831--8131Chr04:15870679..15870703 (25 bp)
GGACATGGTCTATATCCAGACTCAT
LOC_Os04g27190
Os.27794.1.S1_at--526--3151Chr04:15870619..15870643 (25 bp)
AATTCTTATGCGTATACTCTATGTG
LOC_Os04g27190
Os.27794.1.S1_at--431--851Chr04:15870570..15870594 (25 bp)
ATGGCACCGTCCGAAGTGCATTGCC
LOC_Os04g27190
Target Sequence 
AAGTGCCGTTATAGCTTGTGCAAAGATTATGCGTTTCATGAACGACATTGCTGCATTCAAGTCTGGAAGAAAGAACAAAG
GAGATGCCGCAAACACAGTAGAGTGCTATATCAATGAGCACAAGGTTACAAGCGAAGTTGCCTTAGACAAGATCGAATCA
ATGATTGAAAGTGAATGGAGAACCCTGAATCAGGTTCGTTGTGATCATCAAAAGCAGTTCCATGTGGTGCAACGAGTTAT
GAATTTGGCCGTAGCAGTGCCATTCTTTTACGATAAGAAGAAAGATGCATATACATTTTCGAAGTATCATCAGGGAAATG
TTGGGAATCTGTTTGTGAATCCTGTCACCCTTTAGAACTGAGCTATCAACAATGCAGCAAACTATGTGCTTACACAATGC
TTATGTAATTCTATCTCCATCTTAAAATAAGTTCACTTTTGTACATAAATCTGGACATGGTCTATATCCAGACTCATGTA
TAGAATGAAATTTATTTTGTGATGCAGGTAGCAATTCTTATGCGTATACTCTATGTGTACGTTGGTAATTAGTAAATANN
GATGGCACCGTCCGAAGTGCATTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis