Browse Element(s) Details


OsAffx.1300.1.S1_at

Description gb:NM_188243.1
DB_XREF= gi:34903569
GEN=P0498B01.24
TID=OsAffx.1300.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0498B01.24 (P0498B01.24), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g263503/11hypothetical protein
LOC_Os04g271602/11hypothetical protein
LOC_Os11g313001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26290OsAffx.27522.1.S1_x_at2/117+15111382..15116482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26290OsAffx.3613.1.S1_x_at1/117+15111382..15116482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26300NANA7+15119001..15120443retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26310OsAffx.16419.1.S1_at11/117+15122126..15122617hypothetical protein
LOC_Os07g26320NANA7+15128414..15130115retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g26330NANA7+15131175..15131441retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g26340NANA7+15135011..15136806retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g26350OsAffx.1300.1.S1_at3/117+15141147..15145728hypothetical protein
LOC_Os07g26350OsAffx.8801.1.S1_at3/117+15141147..15145728hypothetical protein
LOC_Os07g26350OsAffx.21605.1.S1_at1/117+15141147..15145728hypothetical protein
LOC_Os07g26360OsAffx.22699.1.S1_x_at3/117+15146798..15151907retrotransposon protein, putative, unclassified
LOC_Os07g26360OsAffx.940.1.S1_x_at1/117+15146798..15151907retrotransposon protein, putative, unclassified
LOC_Os07g26370OsAffx.13786.1.S1_x_at2/117+15154043..15155218hypothetical protein
LOC_Os07g26370OsAffx.18275.1.S1_x_at1/117+15154043..15155218hypothetical protein
LOC_Os07g26380NANA7+15157949..15158803transposon protein, putative, unclassified
LOC_Os07g26390NANA7+15162714..15167237retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26400NANA7+15167486..15169442retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1300.1.S1_at--542--5011Chr01:5187710..5188181 (25 bp)
GCAGGGCGACGTGCATGTCCAAAGC
NONE
OsAffx.1300.1.S1_at--691--1671NONE
AGCCGATTGGCTAGGACTCTATCCA
NONE
OsAffx.1300.1.S1_at--115--31NONE
ATTGGCTAGGACTCTATCCACGCGT
NONE
OsAffx.1300.1.S1_at--1060--8294Chr09:8699019..8699040 (22 bp)
GGCTAGGACTCTATCCACGCGTGGC
NONE
OsAffx.1300.1.S1_at--86--10751Chr01:5189414..5189438 (25 bp)
TTGAAGCATATCGACCCAACCCAAT
NONE
OsAffx.1300.1.S1_at--59--251Chr01:5189421..5189445 (25 bp)
ATATCGACCCAACCCAATATCGTAC
NONE
OsAffx.1300.1.S1_at--777--1693Chr03:20563796..20563816 (21 bp)
ACCAAACCAAGTCTGACTCGAACTT
NONE
OsAffx.1300.1.S1_at--547--5718Chr11:17763850..17763869 (20 bp)
GACTCGAACTTAGCCGATCCAATCG
NONE
OsAffx.1300.1.S1_at--353--597Chr07:15142206..15142225 (20 bp)
ATCCAATCGTAGCTGATCCGGACTC
LOC_Os07g26350
OsAffx.1300.1.S1_at--431--3196Chr07:15142206..15142228 (23 bp)
CAATCGTAGCTGATCCGGACTCCAG
LOC_Os07g26350
OsAffx.1300.1.S1_at--450--88511Chr08:3081902..3081921 (20 bp)
TGATCCGGACTCCAGCCGATTTTTA
NONE
Target Sequence 
GCAGGGCGACGTGCATGTCCAAAGCTCGCCTTCGGGTATGCTAGCGTGCCAGTGGATTTGATCCTGCAATCAACAAGAAA
TAAAGGCAAAGAAACCGCGGTTAAATCTATAAATGATAGCCGATTGGCTAGGACTCTATCCACGCGTGGCAATCATCTTG
AAGCATATCGACCCAACCCAATATCGTACACCAAGTCGTATTGTCGGAATCGGCTGCATCACCAAACCAAGTCTGACTCG
AACTTAGCCGATCCAATCGTAGCTGATCCGGACTCCAGCCGATTTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1300.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis