Browse Element(s) Details


OsAffx.16419.1.S1_at

Description tigr:9635.m02531
TID=OsAffx.16419.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2631011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26260OsAffx.22947.1.S1_x_at4/117+15099090..15103570retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26260OsAffx.22947.2.S1_x_at2/117+15099090..15103570retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26260OsAffx.22947.5.S1_at1/117+15099090..15103570retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26260OsAffx.22947.3.S1_x_at1/117+15099090..15103570retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26260OsAffx.22947.5.S1_x_at1/117+15099090..15103570retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26270NANA7+15104976..15106180retrotransposon protein, putative, unclassified
LOC_Os07g26280NANA7+15106739..15107889retrotransposon protein, putative, unclassified
LOC_Os07g26290OsAffx.27522.1.S1_x_at2/117+15111382..15116482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26290OsAffx.3613.1.S1_x_at1/117+15111382..15116482retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26300NANA7+15119001..15120443retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26310OsAffx.16419.1.S1_at11/117+15122126..15122617hypothetical protein
LOC_Os07g26320NANA7+15128414..15130115retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g26330NANA7+15131175..15131441retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g26340NANA7+15135011..15136806retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g26350OsAffx.1300.1.S1_at3/117+15141147..15145728hypothetical protein
LOC_Os07g26350OsAffx.8801.1.S1_at3/117+15141147..15145728hypothetical protein
LOC_Os07g26350OsAffx.21605.1.S1_at1/117+15141147..15145728hypothetical protein
LOC_Os07g26360OsAffx.22699.1.S1_x_at3/117+15146798..15151907retrotransposon protein, putative, unclassified
LOC_Os07g26360OsAffx.940.1.S1_x_at1/117+15146798..15151907retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16419.1.S1_at--1130--7551Chr07:15122197..15122221 (25 bp)
GGGCCGATCTGGACCGTCGATCCCA
LOC_Os07g26310
OsAffx.16419.1.S1_at--1060--6391Chr07:15122202..15122226 (25 bp)
GATCTGGACCGTCGATCCCATGGGC
LOC_Os07g26310
OsAffx.16419.1.S1_at--288--1771Chr07:15122209..15122233 (25 bp)
ACCGTCGATCCCATGGGCCGGCGGT
LOC_Os07g26310
OsAffx.16419.1.S1_at--52--4496Chr11:25422573..25422596 (24 bp)
GCCGGCGGTGGACCACTCGTGTGGT
NONE
OsAffx.16419.1.S1_at--1113--671Chr07:15122325..15122565 (25 bp)
ATGACGTCAGCCCTGATTTTGGCCA
LOC_Os07g26310
OsAffx.16419.1.S1_at--842--8931Chr07:15122326..15122566 (25 bp)
TGACGTCAGCCCTGATTTTGGCCAT
LOC_Os07g26310
OsAffx.16419.1.S1_at--254--171Chr07:15122556..15122580 (25 bp)
ATTTTGGCCATTTCATCGATCCACG
LOC_Os07g26310
OsAffx.16419.1.S1_at--730--10231Chr07:15122558..15122582 (25 bp)
TTTGGCCATTTCATCGATCCACGGT
LOC_Os07g26310
OsAffx.16419.1.S1_at--744--8451Chr07:15122560..15122584 (25 bp)
TGGCCATTTCATCGATCCACGGTTT
LOC_Os07g26310
OsAffx.16419.1.S1_at--1145--4431Chr07:15122562..15122586 (25 bp)
GCCATTTCATCGATCCACGGTTTCT
LOC_Os07g26310
OsAffx.16419.1.S1_at--482--4311Chr07:15122563..15122587 (25 bp)
CCATTTCATCGATCCACGGTTTCTC
LOC_Os07g26310
Target Sequence 
GGGCCGATCTGGACCGTCGATCCCATGGGCCGGCGGTGGACCACTCGTGTGGTCCCGGTCCACGGTAGACCGGCCGCCTC
GTGCCGCTGACATGCGGGGCCCGCTTGCCGGCGCCGCCCCCTCCCTTGATGACGTCAGCCCTGATTTTGGCCATTTCATC
GATCCACGGTTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis