Browse Element(s) Details


Os.27802.1.S1_s_at

Description gb:AK101560.1
DB_XREF= gi:32986769
TID=Os.27802.1
CNT=16
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.27802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033050D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033050D01, full insert sequence.
FL= gb:AK120854.1 gb:AK101560.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4385011/11serine esterase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g43820Os.38982.1.S1_at11/112+26450581..26451879AP2 domain containing protein, expressed
LOC_Os02g43830Os.1354.1.S1_a_at11/112+26459827..264634113-isopropylmalate dehydratase, small subunit family protein, expressed
LOC_Os02g43840Os.53419.1.S1_at11/112+26465764..26467753UPF0326 protein hag1, putative, expressed
LOC_Os02g43850Os.27802.1.S1_s_at11/112+26470792..26475258serine esterase family protein, expressed
LOC_Os02g43860Os.22680.1.S1_at11/112+26481468..26485355amino acid transporter, putative, expressed
LOC_Os02g43870Os.4943.1.S1_at11/112+26488631..26491835Protein kinase domain containing protein, expressed
LOC_Os02g43880OsAffx.12482.1.S1_at11/112+26492948..26493430hypothetical protein
LOC_Os02g43890OsAffx.12483.1.S1_at11/112+26493899..26494502hypothetical protein
LOC_Os02g43900Os.50743.1.S1_at11/112+26495314..26496568expressed protein
LOC_Os02g43906Os.26831.1.A1_a_at11/112+26498487..26501649ceramide kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27802.1.S1_s_at--360--951Chr02:26472307..26472331 (25 bp)
AGGAAGCAAGATTTACCCACATATT
LOC_Os02g43850
Os.27802.1.S1_s_at--10--10711Chr02:26472233..26472257 (25 bp)
TTGCCGATGTGGACAGCTGCATGTT
LOC_Os02g43850
Os.27802.1.S1_s_at--1008--9631Chr02:26471164..26471187 (24 bp)
TCAGGTCAAAGATCCCGTTATGCAT
LOC_Os02g43850
Os.27802.1.S1_s_at--940--4951Chr02:26471143..26471167 (25 bp)
GCATAGCGAAGGTGCCGATGTCATA
LOC_Os02g43850
Os.27802.1.S1_s_at--211--6391Chr02:26471110..26471134 (25 bp)
GATCGACCATTTCGTCCTATAGTAA
LOC_Os02g43850
Os.27802.1.S1_s_at--544--1231Chr02:26471043..26471067 (25 bp)
AGTTGCTAACTGCTGATTTGCCGAG
LOC_Os02g43850
Os.27802.1.S1_s_at--799--4491Chr02:26471024..26471048 (25 bp)
GCCGAGCCTGGTGAGCAAGTTTATC
LOC_Os02g43850
Os.27802.1.S1_s_at--1059--10131Chr02:26471003..26471027 (25 bp)
TATCGCAAAATCCAGGTTTCGGTTG
LOC_Os02g43850
Os.27802.1.S1_s_at--369--10031Chr02:26470919..26470943 (25 bp)
TAGAAAACTCGCTGCAGATGCCTCG
LOC_Os02g43850
Os.27802.1.S1_s_at--783--1291Chr02:26470904..26470928 (25 bp)
AGATGCCTCGTCATTCATTATGTAT
LOC_Os02g43850
Os.27802.1.S1_s_at--187--6431Chr02:26470876..26470900 (25 bp)
GATCATGTTCGTTGTTCGTTGTAAC
LOC_Os02g43850
Target Sequence 
AGGAAGCAAGATTTACCCACATATTGTATATGAAGAACTATCCAAAGCAGAAACAATGAATCAATGTACTGATGTTGCCG
ATGTGGACAGCTGCATGTTAGAAGAACGGCTTTTAAGAGGTCTGAAGCTTGTGTCGTGGGAAAAGGTGGATGTCAGCTTC
CACAACAGCAAAGTAAGATCTGCAGCACATAGTGTGATTCAGGTCAAAGATCCCGTTATGCATAGCGAAGGTGCCGATGT
CATAAACCATATGATCGACCATTTCGTCCTATAGTAAAACAGCTCCGATATCTAGAAGCAAGCTTGAGCGAGGAACGTCA
GTTGCTAACTGCTGATTTGCCGAGCCTGGTGAGCAAGTTTATCGCAAAATCCAGGTTTCGGTTGTGTGATAAATGGCACT
AAAAAGGAGAAACTGATAGGCAAGTACATATATACAGGAGAAATAGAAAACTCGCTGCAGATGCCTCGTCATTCATTATG
TATTATGATCATGTTCGTTGTTCGTTGTAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27802.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis