Browse Element(s) Details


Os.27876.1.S1_x_at

Description gb:AK069031.1
DB_XREF= gi:32979055
TID=Os.27876.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27876 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023003D15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003D15, full insert sequence.
FL= gb:AK069031.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0454011/11Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os08g045603/11Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04520Os.13877.1.S1_at6/118+2225597..2229850hypothetical protein
LOC_Os08g04520OsAffx.11193.1.S1_x_at2/118+2225597..2229850hypothetical protein
LOC_Os08g04520OsAffx.28592.1.S1_at1/118+2225597..2229850hypothetical protein
LOC_Os08g04530NANA8+2232237..2233311hypothetical protein
LOC_Os08g04540Os.27876.1.S1_x_at11/118+2249663..2251528Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os08g04550OsAffx.29030.1.S1_at11/118+2259647..2260465hypothetical protein
LOC_Os08g04560OsAffx.5702.1.S1_s_at11/118+2262107..2264224Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os08g04560Os.27876.1.S1_x_at3/118+2262107..2264224Pyridoxal-dependent decarboxylase conserved domain containing protein, expressed
LOC_Os08g04570OsAffx.29031.2.S1_at11/118+2274231..2276255hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006520biological_processamino acid metabolism
GO:0004837molecular_functiontyrosine decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27876.1.S1_x_at--380--7592Chr08:2250949..2250973 (25 bp)
GGGCTCAAGCTCTGGATGGTCATGC
LOC_Os08g04540
Os.27876.1.S1_x_at--906--811Chr08:2250964..2250988 (25 bp)
ATGGTCATGCGCACCTACGGCGTCG
LOC_Os08g04540
Os.27876.1.S1_x_at--1115--1592Chr08:2250992..2251016 (25 bp)
AGCTGCAGGAGCACATCCGGAGCGA
LOC_Os08g04540
Os.27876.1.S1_x_at--157--4391Chr08:2251027..2251051 (25 bp)
GCCAAGGTGTTCGAGGACCTCGTCC
LOC_Os08g04540
Os.27876.1.S1_x_at--397--10611Chr08:2251066..2251090 (25 bp)
TTCGAGGTCGTCGTGCCGAGGAACT
LOC_Os08g04540
Os.27876.1.S1_x_at--269--9412Chr08:2251097..2251121 (25 bp)
TCGTCTGCTTCAGGATCAGGGCCGG
LOC_Os08g04540
Os.27876.1.S1_x_at--1092--8531Chr08:2251178..2251202 (25 bp)
TGGAGCGGCTGAACAAGACCGGCAA
LOC_Os08g04540
Os.27876.1.S1_x_at--586--5771Chr08:2251314..2251338 (25 bp)
GACGACCACCGAGATGATGAACTAA
LOC_Os08g04540
Os.27876.1.S1_x_at--768--6811Chr08:2251408..2251432 (25 bp)
GTTTTAGATGCGAATCTGTTGATTC
LOC_Os08g04540
Os.27876.1.S1_x_at--22--7391Chr08:2251438..2251462 (25 bp)
GTGAGCTATTTATACCTATGGATAT
LOC_Os08g04540
Os.27876.1.S1_x_at--1003--2771Chr08:2251504..2251528 (25 bp)
AAGATGAACTGATACTATACCTTAC
LOC_Os08g04540
Target Sequence 
GGGCTCAAGCTCTGGATGGTCATGCGCACCTACGGCGTCGCNAAGCTGCAGGAGCACATCCGGAGCGACGTCGCCATGGC
CAAGGTGTTCGAGGACCTCGTCCGCGGCGACGACAGGTTCGAGGTCGTCGTGCCGAGGAACTTCGCNCTCGTCTGCTTCA
GGATCAGGGCCGGCGCCGGCGCCGCCGCCGCGACGGAGGAGGACGCCGACGAGGCGAACCGCGAGCTGATGGAGCGGCTG
AACAAGACCGGCAAGGCGTACGTGGCGCACACGGTGGTCGGCGGCAGGTTCGTGCTGCGCTTCGCGGTGGGCTCGTCGCT
GCAGGANGAGCATCACGTGCGGAGCGCGTGGGAGCTCATCAAGAAGACGACCACCGAGATGATGAACTAAGTAAAGAGAN
GATTACAAATAAATACACATATTTAGAACACATATACGTTTTTGATTTTTTTTNTTGGGGTTTTAGATGCGAATCTGTTG
ATTCATTNTGTGAGCTATTTATACCTATGGATATATGGATCAAAATAAATTATTATTTGGNTTGTAATTTTTTTAAAAGA
TGAACTGATACTATACCTTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27876.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis