Browse Element(s) Details


Os.27916.1.S1_at

Description gb:AK065860.1
DB_XREF= gi:32975878
TID=Os.27916.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.27916 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043L18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043L18, full insert sequence.
FL= gb:AK065860.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1065011/11tyrosine specific protein phosphatase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10629NANA6+5533562..5534029NA
LOC_Os06g10640Os.50619.1.S1_x_at1/116+5539757..5540670hypothetical protein
LOC_Os06g10650Os.27916.1.S1_at11/116+5554008..5558137tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os06g10660Os.5724.1.S1_at11/116+5558910..5562098LysM domain GPI-anchored protein 1 precursor, putative, expressed
LOC_Os06g10670NANA6+5568911..5570472Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g10680OsAffx.4791.1.S1_at10/116+5571600..5572851hypothetical protein
LOC_Os06g10690Os.9899.1.S1_at11/116+5574869..5583374C1-like domain containing protein, expressed
LOC_Os06g10690Os.9899.1.S2_at11/116+5574869..5583374C1-like domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0004721molecular_functionphosphoprotein phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27916.1.S1_at--1036--2291Chr06:5557592..5557616 (25 bp)
AAATGGTGCTTGTCTTCAGTGTTCG
LOC_Os06g10650
Os.27916.1.S1_at--825--5891Chr06:5557673..5557697 (25 bp)
GAGCTGTTCGACATCTCAAGCTTGA
LOC_Os06g10650
Os.27916.1.S1_at--486--5091Chr06:5557699..5557723 (25 bp)
GCACCTGACAGCTTCACATTGTTAA
LOC_Os06g10650
Os.27916.1.S1_at--762--31Chr06:5557716..5557740 (25 bp)
ATTGTTAACCAAGAGCGTGCGATTC
LOC_Os06g10650
Os.27916.1.S1_at--511--10451Chr06:5557758..5557782 (25 bp)
TTAAGTCCTAGCAAATCTCCCAAAC
LOC_Os06g10650
Os.27916.1.S1_at--196--10591Chr06:5557791..5557815 (25 bp)
TTCTCCCTGCAGCTACTGAATTTGA
LOC_Os06g10650
Os.27916.1.S1_at--980--1331Chr06:5557887..5557911 (25 bp)
AGAGTTCTAGTTTTCTCCTGCTTAG
LOC_Os06g10650
Os.27916.1.S1_at--531--10451Chr06:5557908..5557932 (25 bp)
TTAGCTCCCTGCAGATCCTATGAAC
LOC_Os06g10650
Os.27916.1.S1_at--38--10371Chr06:5557976..5558000 (25 bp)
TTTTTTCTGGTAACTCTTGCGAGGA
LOC_Os06g10650
Os.27916.1.S1_at--539--3771Chr06:5558049..5558073 (25 bp)
CTCGGCGGGAATGAACTTTCTCTTG
LOC_Os06g10650
Os.27916.1.S1_at--481--2431Chr06:5558081..5558105 (25 bp)
AAAAGCTTGACTAGCTCTTCTTGCA
LOC_Os06g10650
Target Sequence 
AAATGGTGCTTGTCTTCAGTGTTCGACGAGTACCAGCGCTTCGCCGCTGCGAAGGCGAGGAGCACCGATCAGAGATTCAT
GGAGCTGTTCGACATCTCAAGCTTGANGCACCTGACAGCTTCACATTGTTAACCAAGAGCGTGCGATTCGCGCTGTCTCC
TCCTCTTTAAGTCCTAGCAAATCTCCCAAACCTATGATCTTCTCCCTGCAGCTACTGAATTTGATTCAGCAGTGAATAAT
TTTGGAACCCGTAGAATGAACCCCGTAAAAAAAGAAAATGTTTGTAANTTGAGTTGAGAGTTCTAGTTTTCTCCTGCTTA
GCTCCCTGCAGATCCTATGAACCAGACAGTTGTGGGTAGGATTGCAAGAGGTTTTTTCCCCATTTTTTTTTCTGGTAACT
CTTGCGAGGAATTCACCAATTGTTTTCGGGTACTGAAAGCTGTACTCGAGCAGCATTGCTCGGCGGGAATGAACTTTCTC
TTGATGCAAAAAAAGCTTGACTAGCTCTTCTTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27916.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis