Browse Element(s) Details


Os.9899.1.S2_at

Description gb:AK065500.1
DB_XREF= gi:32975518
TID=Os.9899.1
CNT=25
FEA=FLmRNA
TIER=FL+Stack
STK=7
UG=Os.9899 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013064D24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013030I08, full insert sequence.
FL= gb:AK066363.1 gb:AK065500.1 gb:AK062037.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1069011/11C1-like domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10650Os.27916.1.S1_at11/116+5554008..5558137tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os06g10660Os.5724.1.S1_at11/116+5558910..5562098LysM domain GPI-anchored protein 1 precursor, putative, expressed
LOC_Os06g10670NANA6+5568911..5570472Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g10680OsAffx.4791.1.S1_at10/116+5571600..5572851hypothetical protein
LOC_Os06g10690Os.9899.1.S1_at11/116+5574869..5583374C1-like domain containing protein, expressed
LOC_Os06g10690Os.9899.1.S2_at11/116+5574869..5583374C1-like domain containing protein, expressed
LOC_Os06g10700NANA6+5585612..5585902hypothetical protein
LOC_Os06g10710OsAffx.4792.1.S1_at11/116+5587422..5588312hypothetical protein
LOC_Os06g10720NANA6+5596521..5596826hypothetical protein
LOC_Os06g10730Os.36396.1.S1_at11/116+5600764..5603983expressed protein
LOC_Os06g10740OsAffx.12861.2.S1_x_at11/116+5607405..5610438hAT family dimerisation domain containing protein
LOC_Os06g10740OsAffx.12861.3.S1_x_at9/116+5607405..5610438hAT family dimerisation domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9899.1.S2_at--684--2631Chr06:5575415..5575439 (25 bp)
AACCAAGGTGGCTCCTTCGTGGATA
LOC_Os06g10690
Os.9899.1.S2_at--241--5571Chr06:5575361..5575385 (25 bp)
GAAAGCACATGCAGCCAGCGGAGCT
LOC_Os06g10690
Os.9899.1.S2_at--326--4691Chr06:5575344..5575368 (25 bp)
GCGGAGCTGGCCAGTGTAACCATGA
LOC_Os06g10690
Os.9899.1.S2_at--936--5071Chr06:5575306..5575330 (25 bp)
GCACGGTCGGCCAAGGTTGTAAATT
LOC_Os06g10690
Os.9899.1.S2_at--243--2571Chr06:5575277..5575301 (25 bp)
AACGGCGCAGATGGGAGTTCTTCAA
LOC_Os06g10690
Os.9899.1.S2_at--97--2331Chr06:5575254..5575278 (25 bp)
AAAGTGTGACTTGAGCTTCCGACCA
LOC_Os06g10690
Os.9899.1.S2_at--1123--71Chr06:5575225..5575249 (25 bp)
ATTCGAGTATTTGACCCCTCAAGGC
LOC_Os06g10690
Os.9899.1.S2_at--1108--2931Chr06:5575205..5575229 (25 bp)
AAGGCTCAAGCTCACATCACTCAGA
LOC_Os06g10690
Os.9899.1.S2_at--1116--5631Chr06:5575010..5575034 (25 bp)
GACAGTTTCCCAGTAGCTAACCAGA
LOC_Os06g10690
Os.9899.1.S2_at--1100--771Chr06:5574954..5574978 (25 bp)
ATGTGCTATGACGATTACCTGTTGC
LOC_Os06g10690
Os.9899.1.S2_at--389--1771Chr06:5574938..5574962 (25 bp)
ACCTGTTGCGTTGATGTATGGCTAC
LOC_Os06g10690
Target Sequence 
AACCAAGGTGGCTCCTTCGTGGATAGCCAGAGTGTTTGAAGCATTCTCCATGTGGAAAGCACATGCAGCCAGCGGAGCTG
GCCAGTGTAACCATGATATTGCCATAGGGGCACGGTCGGCCAAGGTTGTAAATTTACAAACGGCGCAGATGGGAGTTCTT
CAAAGTGTGACTTGAGCTTCCGACCAGAATATTCGAGTATTTGACCCCTCAAGGCTCAAGCTCACATCACTCAGACGAGG
GGTGACATGGCAGAATTCATCCACTGATTTAGCTACTAGATGCTAATCTGTGAGATATGCTTTGTACAATTGTTAGTTTA
GTTCTGTAAAAGAAAACAAGCAATTGCCATTAGTGGATGATTAAAGAGAAGCGAGGAAAGTCTTGTTAGGCTGACATCTG
TAGCTGACAGTTTCCCAGTAGCTAACCAGAACATGAGTGAATTAAGCACATGTAGGTTCAAATGTGCTATGACGATTACC
TGTTGCGTTGATGTATGGCTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9899.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis