Browse Element(s) Details


Os.36396.1.S1_at

Description gb:AK063529.1
DB_XREF= gi:32973547
TID=Os.36396.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36396 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-117-B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-117-B01, full insert sequence.
FL= gb:AK063529.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1073011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10690Os.9899.1.S1_at11/116+5574869..5583374C1-like domain containing protein, expressed
LOC_Os06g10690Os.9899.1.S2_at11/116+5574869..5583374C1-like domain containing protein, expressed
LOC_Os06g10700NANA6+5585612..5585902hypothetical protein
LOC_Os06g10710OsAffx.4792.1.S1_at11/116+5587422..5588312hypothetical protein
LOC_Os06g10720NANA6+5596521..5596826hypothetical protein
LOC_Os06g10730Os.36396.1.S1_at11/116+5600764..5603983expressed protein
LOC_Os06g10740OsAffx.12861.2.S1_x_at11/116+5607405..5610438hAT family dimerisation domain containing protein
LOC_Os06g10740OsAffx.12861.3.S1_x_at9/116+5607405..5610438hAT family dimerisation domain containing protein
LOC_Os06g10750OsAffx.20681.1.S1_s_at11/116+5613005..5615986nodulin MtN21 family protein, putative, expressed
LOC_Os06g10750OsAffx.20681.1.S1_at9/116+5613005..5615986nodulin MtN21 family protein, putative, expressed
LOC_Os06g10750OsAffx.3165.1.S1_at1/116+5613005..5615986nodulin MtN21 family protein, putative, expressed
LOC_Os06g10760Os.13510.1.S1_at10/116+5618151..5620735emp24/gp25L/p24 family protein, expressed
LOC_Os06g10770Os.4905.4.S1_a_at11/116+5620965..5624688N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os06g10770Os.4905.4.S1_at11/116+5620965..5624688N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os06g10780OsAffx.27557.2.S1_at11/116+5628417..5630683AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36396.1.S1_at--634--5211Chr06:5603394..5603418 (25 bp)
GAATTCTGATTTTGACTATGCCTCT
LOC_Os06g10730
Os.36396.1.S1_at--701--3691Chr06:5603409..5603433 (25 bp)
CTATGCCTCTTTGTGTACAGGGAGA
LOC_Os06g10730
Os.36396.1.S1_at--74--9831Chr06:5603487..5603511 (25 bp)
TAACAAGAGCGCACCATGCATCGGC
LOC_Os06g10730
Os.36396.1.S1_at--127--4791Chr06:5603559..5603583 (25 bp)
GCTGCCACCATCACTTGTTGGAATT
LOC_Os06g10730
Os.36396.1.S1_at--860--5211Chr06:5603597..5603621 (25 bp)
GAATTCACAGGTCGTTGCCTTGCTT
LOC_Os06g10730
Os.36396.1.S1_at--316--4931Chr06:5603618..5603642 (25 bp)
GCTTGCTTGCTCCTCACATTGTGAA
LOC_Os06g10730
Os.36396.1.S1_at--171--2451Chr06:5603708..5603732 (25 bp)
AAAATGAGTGCTTCCGTGTGAGAGA
LOC_Os06g10730
Os.36396.1.S1_at--405--6591Chr06:5603760..5603784 (25 bp)
GATTGCTTAGCTCTGGCAGTTGTGA
LOC_Os06g10730
Os.36396.1.S1_at--516--7351Chr06:5603781..5603805 (25 bp)
GTGAATTTGTGACGCATCTCTCCAA
LOC_Os06g10730
Os.36396.1.S1_at--123--2231Chr06:5603825..5603849 (25 bp)
ACAAGTGTGTTGTCCGTTTCTTGAT
LOC_Os06g10730
Os.36396.1.S1_at--673--5291Chr06:5603872..5603896 (25 bp)
GAAGGCCAGAGCATTACAGCAAATA
LOC_Os06g10730
Target Sequence 
GAATTCTGATTTTGACTATGCCTCTTTGTGTACAGGGAGAGGAGGGAGGATTCAGAGATGGATATTATCAATATACTCCA
TGGATGCAAATCCTAACAAGAGCGCACCATGCATCGGCGACGCATCAGCATGCACTAACTTTAATTGCCAAGGCCCTAGT
TGATTGCTGCCACCATCACTTGTTGGAATTATTTTTGTTAGGTGAATTCACAGGTCGTTGCCTTGCTTGCTTGCTCCTCA
CATTGTGAAAAGAACCACCCCTCCAATGCAAAAATGAACTGTTCATCTCTTTATATAGATGCATACTTAAAGCAAAAATG
AGTGCTTCCGTGTGAGAGAAAAAAAATCAATTAATTAAGACATACTGATTGCTTAGCTCTGGCAGTTGTGAATTTGTGAC
GCATCTCTCCAAAAGTAGTTATGTGCGTCAGACAAGTGTGTTGTCCGTTTCTTGATTGTGAGGGAGCAAAACTTTCATGA
AGGCCAGAGCATTACAGCAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis