Browse Element(s) Details


OsAffx.20681.1.S1_s_at

Description tigr:9634.m01048
TID=OsAffx.20681.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Integral membrane protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1075011/11nodulin MtN21 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10710OsAffx.4792.1.S1_at11/116+5587422..5588312hypothetical protein
LOC_Os06g10720NANA6+5596521..5596826hypothetical protein
LOC_Os06g10730Os.36396.1.S1_at11/116+5600764..5603983expressed protein
LOC_Os06g10740OsAffx.12861.2.S1_x_at11/116+5607405..5610438hAT family dimerisation domain containing protein
LOC_Os06g10740OsAffx.12861.3.S1_x_at9/116+5607405..5610438hAT family dimerisation domain containing protein
LOC_Os06g10750OsAffx.20681.1.S1_s_at11/116+5613005..5615986nodulin MtN21 family protein, putative, expressed
LOC_Os06g10750OsAffx.20681.1.S1_at9/116+5613005..5615986nodulin MtN21 family protein, putative, expressed
LOC_Os06g10750OsAffx.3165.1.S1_at1/116+5613005..5615986nodulin MtN21 family protein, putative, expressed
LOC_Os06g10760Os.13510.1.S1_at10/116+5618151..5620735emp24/gp25L/p24 family protein, expressed
LOC_Os06g10770Os.4905.4.S1_a_at11/116+5620965..5624688N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os06g10770Os.4905.4.S1_at11/116+5620965..5624688N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os06g10780OsAffx.27557.2.S1_at11/116+5628417..5630683AP2 domain containing protein, expressed
LOC_Os06g10790Os.17411.1.S1_at11/116+5632355..5634722Protein kinase domain containing protein, expressed
LOC_Os06g10800NANA6+5635937..5636932Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g10810Os.9395.1.S1_at11/116+5637278..5640570Phosphate carrier protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20681.1.S1_s_at--124--1471Chr06:5615611..5615635 (25 bp)
AGAAGGGCTTGCCATTGACCACGCT
LOC_Os06g10750
OsAffx.20681.1.S1_s_at--572--8911Chr06:5615626..5615650 (25 bp)
TGACCACGCTGCAGGCCAACGGCGA
LOC_Os06g10750
OsAffx.20681.1.S1_s_at--281--4611Chr06:5615653..5615677 (25 bp)
GCGACGGCAAGCTTGCTGTGCTCGT
LOC_Os06g10750
OsAffx.20681.1.S1_s_at--86--5171Chr06:5615659..5615683 (25 bp)
GCAAGCTTGCTGTGCTCGTCGCCGA
LOC_Os06g10750
OsAffx.20681.1.S1_s_at--887--2911Chr06:5615703..5615727 (25 bp)
AAGGATGTCTACTAGCTTCTCTCTG
LOC_Os06g10750
OsAffx.20681.1.S1_s_at--1115--10571Chr06:5615719..5615743 (25 bp)
TTCTCTCTGACTCTCTGTGTGTATG
LOC_Os06g10750
OsAffx.20681.1.S1_s_at--395--4451Chr06:5615775..5615799 (25 bp)
GCCTCTTGCGTGCAAACGGTGTTAA
LOC_Os06g10750
OsAffx.20681.1.S1_s_at--958--10451Chr06:5615845..5615869 (25 bp)
TTAGCTGTGTGAGTTAATGATGGAT
LOC_Os06g10750
OsAffx.20681.1.S1_s_at--416--7951Chr06:5615866..5615890 (25 bp)
GGATAAGATATACTACGCAAGTGTT
LOC_Os06g10750
OsAffx.20681.1.S1_s_at--431--2871Chr06:5615895..5615919 (25 bp)
AAGTGTTATGCATGTAGCGTTGTCT
LOC_Os06g10750
OsAffx.20681.1.S1_s_at--1147--1631Chr06:5615910..5615934 (25 bp)
AGCGTTGTCTGTTGTGACGTACTCT
LOC_Os06g10750
Target Sequence 
AGAAGGGCTTGCCATTGACCACGCTGCAGGCCAACGGCGACGGCGACGGCAAGCTTGCTGTGCTCGTCGCCGACGTCGAG
ATGCCGGCGGTGAAGGATGTCTACTAGCTTCTCTCTGACTCTCTGTGTGTATGTGCGTGCAACAATGTGCATGCATGGTC
GATCGCCTCTTGCGTGCAAACGGTGTTAATTTGAGGGGTAATTAAGATGGTTTAGATTGTTGATTAGTAATTAATTAGCT
GTGTGAGTTAATGATGGATAAGATATACTACGCAAGTGTTATGAAAGTGTTATGCATGTAGCGTTGTCTGTTGTGACGTA
CTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20681.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis