Browse Element(s) Details

Os.17411.1.S1_at

Description

gb:AK110453.1
DB_XREF= gi:32995662
TID=Os.17411.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17411 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-166-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-166-E10, full insert sequence.
FL= gb:AK110453.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g10790	11/11	Protein kinase domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g10740	OsAffx.12861.2.S1_x_at	11/11	6	+	5607405..5610438	hAT family dimerisation domain containing protein
LOC_Os06g10740	OsAffx.12861.3.S1_x_at	9/11	6	+	5607405..5610438	hAT family dimerisation domain containing protein
LOC_Os06g10750	OsAffx.20681.1.S1_s_at	11/11	6	+	5613005..5615986	nodulin MtN21 family protein, putative, expressed
LOC_Os06g10750	OsAffx.20681.1.S1_at	9/11	6	+	5613005..5615986	nodulin MtN21 family protein, putative, expressed
LOC_Os06g10750	OsAffx.3165.1.S1_at	1/11	6	+	5613005..5615986	nodulin MtN21 family protein, putative, expressed
LOC_Os06g10760	Os.13510.1.S1_at	10/11	6	+	5618151..5620735	emp24/gp25L/p24 family protein, expressed
LOC_Os06g10770	Os.4905.4.S1_a_at	11/11	6	+	5620965..5624688	N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os06g10770	Os.4905.4.S1_at	11/11	6	+	5620965..5624688	N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os06g10780	OsAffx.27557.2.S1_at	11/11	6	+	5628417..5630683	AP2 domain containing protein, expressed
LOC_Os06g10790	Os.17411.1.S1_at	11/11	6	+	5632355..5634722	Protein kinase domain containing protein, expressed
LOC_Os06g10800	NA	NA	6	+	5635937..5636932	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g10810	Os.9395.1.S1_at	11/11	6	+	5637278..5640570	Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os06g10820	OsAffx.15360.1.S1_at	11/11	6	+	5641246..5641881	Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g10830	NA	NA	6	+	5647265..5649907	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10840	NA	NA	6	+	5652539..5652943	hypothetical protein
LOC_Os06g10850	Os.56712.1.S1_at	11/11	6	+	5656851..5660264	Lipase family protein, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0009737	biological_process	response to abscisic acid stimulus
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.17411.1.S1_at--58--351	1	Chr06:5632650..5632674 (25 bp)	CATGAGGCAGGTGTGCCGGTATCTC	LOC_Os06g10790
Os.17411.1.S1_at--678--571	1	Chr06:5632568..5632592 (25 bp)	GACTCGTCCGATCTCTTCGGTGGCT	LOC_Os06g10790
Os.17411.1.S1_at--886--641	1	Chr06:5632559..5632583 (25 bp)	GATCTCTTCGGTGGCTCGTTCGTCG	LOC_Os06g10790
Os.17411.1.S1_at--418--939	1	Chr06:5632544..5632568 (25 bp)	TCGTTCGTCGTGTCCATGACGTCAT	LOC_Os06g10790
Os.17411.1.S1_at--623--351	1	Chr06:5632503..5632527 (25 bp)	CATGTCGGCCAGCTCGCTGCAAGGC	LOC_Os06g10790
Os.17411.1.S1_at--191--519	1	Chr06:5632485..5632509 (25 bp)	GCAAGGCGGCCGGTGAACTATAGAA	LOC_Os06g10790
Os.17411.1.S1_at--497--471	1	Chr06:5632480..5632504 (25 bp)	GCGGCCGGTGAACTATAGAAGTATA	LOC_Os06g10790
Os.17411.1.S1_at--207--311	1	Chr06:5632434..5632458 (25 bp)	AATATGAGTGTGTTGTGTGTACAGT	LOC_Os06g10790
Os.17411.1.S1_at--757--747	1	Chr06:5632420..5632444 (25 bp)	GTGTGTACAGTAGTGATTGCTCAAA	LOC_Os06g10790
Os.17411.1.S1_at--424--533	1	Chr06:5632384..5632408 (25 bp)	GAAGTGATATGGATGTAGCCCAAAC	LOC_Os06g10790
Os.17411.1.S1_at--270--697	1	Chr06:5632370..5632394 (25 bp)	GTAGCCCAAACAAAAGAATCTGAAT	LOC_Os06g10790

Target Sequence

CATGAGGCAGGTGTGCCGGTATCTCGACGGCGAGGAGATGCTGCAGGAGGACGCCACGCCGGCGGCGATCTTCTCCGGCG
CCGACTCGTCCGATCTCTTCGGTGGCTCGTTCGTCGTGTCCATGACGTCATCCTCCGCCGGCGGCACCATGTCGGCCAGC
TCGCTGCAAGGCGGCCGGTGAACTATAGAAGTATACTGTATAACTATACTGTACTGAATATGAGTGTGTTGTGTGTACAG
TAGTGATTGCTCAAACAAAATTCAGAGAAGTGATATGGATGTAGCCCAAACAAAAGAATCTGAAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis