Browse Element(s) Details


Os.56712.1.S1_at

Description gb:AK110332.1
DB_XREF= gi:32995541
TID=Os.56712.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.56712 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-164-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-164-E01, full insert sequence.
FL= gb:AK110332.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1085011/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10790Os.17411.1.S1_at11/116+5632355..5634722Protein kinase domain containing protein, expressed
LOC_Os06g10800NANA6+5635937..5636932Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g10810Os.9395.1.S1_at11/116+5637278..5640570Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os06g10820OsAffx.15360.1.S1_at11/116+5641246..5641881Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g10830NANA6+5647265..5649907transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10840NANA6+5652539..5652943hypothetical protein
LOC_Os06g10850Os.56712.1.S1_at11/116+5656851..5660264Lipase family protein, expressed
LOC_Os06g10860OsAffx.27558.1.S1_at11/116+5662969..5664310Cytokinin-O-glucosyltransferase 1, putative
LOC_Os06g10870NANA6+5665157..5666014transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10880Os.54299.1.S1_at11/116+5676158..5681034bZIP transcription factor family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.56712.1.S1_at--688--4611Chr06:5659688..5659712 (25 bp)
GCGAGCTCACTGGAGGGCAAGCACC
LOC_Os06g10850
Os.56712.1.S1_at--363--2711Chr06:5659706..5659730 (25 bp)
AAGCACCTCCGGTTCGTGTACTGCA
LOC_Os06g10850
Os.56712.1.S1_at--83--1871Chr06:5659758..5659782 (25 bp)
ACGACGCCGCGTTCCTGTTCAGGCA
LOC_Os06g10850
Os.56712.1.S1_at--723--8791Chr06:5659773..5659797 (25 bp)
TGTTCAGGCACTTCGGCCGCTGCGT
LOC_Os06g10850
Os.56712.1.S1_at--831--4251Chr06:5659862..5659886 (25 bp)
CCGGCGTTCGCGTTGGCCAAGCACG
LOC_Os06g10850
Os.56712.1.S1_at--465--4911Chr06:5660059..5660083 (25 bp)
GCTTCGCAAGCTGCTAGACTAGACA
LOC_Os06g10850
Os.56712.1.S1_at--729--1411Chr06:5660079..5660103 (25 bp)
AGACAGTTAGCCCACTCTCTTGCTC
LOC_Os06g10850
Os.56712.1.S1_at--122--9591Chr06:5660096..5660120 (25 bp)
TCTTGCTCTGCGACTGATGAACTGA
LOC_Os06g10850
Os.56712.1.S1_at--850--391Chr06:5660120..5660144 (25 bp)
ATCACCAATTCACCAGTGGAAATGA
LOC_Os06g10850
Os.56712.1.S1_at--223--5071Chr06:5660150..5660174 (25 bp)
GCACGGGAACGGAACTGAATTATTT
LOC_Os06g10850
Os.56712.1.S1_at--676--3131Chr06:5660167..5660191 (25 bp)
AATTATTTTCCGGTTCCTGTGATAG
LOC_Os06g10850
Target Sequence 
GCGAGCTCACTGGAGGGCAAGCACCTCCGGTTCGTGTACTGCAACGACGTCGTGCCCCGGGTGCCCTACGACGACGCCGC
GTTCCTGTTCAGGCACTTCGGCCGCTGCGTCTACTTCGACGCCGCATACAGGGCGAGGGCCATGGCGGAGGAGCCGAACA
AGAACTACTTCTCGCCGGCGTTCGCGTTGGCCAAGCACGCGAACGCGGCGTGGGAGCTGGCGCGAGGGCTCGCCATCGGG
CGCGTGGCAGGGGGGGAGTACGCGGAAGGGTGGGCGATGCGGGCGGCGAGGGTGGTGGGGCTGGTGTTCCCCGGCTTGCC
GCCGCACGCGCCGCAGGACTACGTGAACGCCACCAGGCTCGCCGGCGCCTCGCTTCGCAAGCTGCTAGACTAGACAGTTA
GCCCACTCTCTTGCTCTGCGACTGATGAACTGATCACCAATTCACCAGTGGAAATGAATCGAGCACGGGAACGGAACTGA
ATTATTTTCCGGTTCCTGTGATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.56712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis