Browse Element(s) Details


OsAffx.27558.1.S1_at

Description tigr:9634.m01058
TID=OsAffx.27558.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=glycosyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1086011/11Cytokinin-O-glucosyltransferase 1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10810Os.9395.1.S1_at11/116+5637278..5640570Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os06g10820OsAffx.15360.1.S1_at11/116+5641246..5641881Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g10830NANA6+5647265..5649907transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10840NANA6+5652539..5652943hypothetical protein
LOC_Os06g10850Os.56712.1.S1_at11/116+5656851..5660264Lipase family protein, expressed
LOC_Os06g10860OsAffx.27558.1.S1_at11/116+5662969..5664310Cytokinin-O-glucosyltransferase 1, putative
LOC_Os06g10870NANA6+5665157..5666014transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10880Os.54299.1.S1_at11/116+5676158..5681034bZIP transcription factor family protein, expressed
LOC_Os06g10890Os.12873.1.S1_at3/116+5687803..5689348expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008194molecular_functionUDP-glycosyltransferase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27558.1.S1_at--367--6111Chr06:5663509..5663533 (25 bp)
GAGTGCATCCAATGGCTCGACAGCA
LOC_Os06g10860
OsAffx.27558.1.S1_at--300--8491Chr06:5663521..5663545 (25 bp)
TGGCTCGACAGCAAGGATCCCAGCT
LOC_Os06g10860
OsAffx.27558.1.S1_at--1107--1571Chr06:5663542..5663566 (25 bp)
AGCTCCGTCATCTACGTTAGCTTCG
LOC_Os06g10860
OsAffx.27558.1.S1_at--728--6771Chr06:5663557..5663581 (25 bp)
GTTAGCTTCGGTAGCATCGCGCGCA
LOC_Os06g10860
OsAffx.27558.1.S1_at--227--4551Chr06:5663629..5663653 (25 bp)
GCCCACCCGTTCATCTGGATGGTGA
LOC_Os06g10860
OsAffx.27558.1.S1_at--470--5371Chr06:5663652..5663676 (25 bp)
GAAGAACGCGGAGCTCTACGGAGAC
LOC_Os06g10860
OsAffx.27558.1.S1_at--180--4311Chr06:5663684..5663708 (25 bp)
GCGAGTTCTTCCCACGGTTTGAAAT
LOC_Os06g10860
OsAffx.27558.1.S1_at--418--8531Chr06:5664051..5664075 (25 bp)
TGGACACCGTAAATGCTGATCCTGT
LOC_Os06g10860
OsAffx.27558.1.S1_at--536--8191Chr06:5664127..5664151 (25 bp)
GGAAGTTGTTGCCACCAGGTTGCCC
LOC_Os06g10860
OsAffx.27558.1.S1_at--660--1011Chr06:5664143..5664167 (25 bp)
AGGTTGCCCATGGTGACATGGCCGC
LOC_Os06g10860
OsAffx.27558.1.S1_at--594--4131Chr06:5664165..5664189 (25 bp)
CGCATTCTGTCGACCAGTTGTTGAA
LOC_Os06g10860
Target Sequence 
GAGTGCATCCAATGGCTCGACAGCAAGGATCCCAGCTCCGTCATCTACGTTAGCTTCGGTAGCATCGCGCGCACGGATCC
GAAGCAGCTCATCGAGCTCGGGCTCGGCCTCGAGGCGTCGGCCCACCCGTTCATCTGGATGGTGAAGAACGCGGAGCTCT
ACGGAGACACGGCGCGCGAGTTCTTCCCACGGTTTGAAATTTCGGGGGTGGACACCGTAAATGCTGATCCTGTCGCACGC
CACGGTCGATGGCTTCGTGACGCACTGCGAGTGAACTCGATCATGGAAGTTGTTGCCACCAGGTTGCCCATGGTGACATG
GCCGCATTCTGTCGACCAGTTGTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis