Browse Element(s) Details

Os.9395.1.S1_at

Description

gb:AK066979.1
DB_XREF= gi:32976997
TID=Os.9395.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9395 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013090N24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013090N24, full insert sequence.
FL= gb:AK066979.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g10810	11/11	Phosphate carrier protein, mitochondrial precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g10750	OsAffx.20681.1.S1_s_at	11/11	6	+	5613005..5615986	nodulin MtN21 family protein, putative, expressed
LOC_Os06g10750	OsAffx.20681.1.S1_at	9/11	6	+	5613005..5615986	nodulin MtN21 family protein, putative, expressed
LOC_Os06g10750	OsAffx.3165.1.S1_at	1/11	6	+	5613005..5615986	nodulin MtN21 family protein, putative, expressed
LOC_Os06g10760	Os.13510.1.S1_at	10/11	6	+	5618151..5620735	emp24/gp25L/p24 family protein, expressed
LOC_Os06g10770	Os.4905.4.S1_a_at	11/11	6	+	5620965..5624688	N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os06g10770	Os.4905.4.S1_at	11/11	6	+	5620965..5624688	N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os06g10780	OsAffx.27557.2.S1_at	11/11	6	+	5628417..5630683	AP2 domain containing protein, expressed
LOC_Os06g10790	Os.17411.1.S1_at	11/11	6	+	5632355..5634722	Protein kinase domain containing protein, expressed
LOC_Os06g10800	NA	NA	6	+	5635937..5636932	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g10810	Os.9395.1.S1_at	11/11	6	+	5637278..5640570	Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os06g10820	OsAffx.15360.1.S1_at	11/11	6	+	5641246..5641881	Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g10830	NA	NA	6	+	5647265..5649907	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10840	NA	NA	6	+	5652539..5652943	hypothetical protein
LOC_Os06g10850	Os.56712.1.S1_at	11/11	6	+	5656851..5660264	Lipase family protein, expressed
LOC_Os06g10860	OsAffx.27558.1.S1_at	11/11	6	+	5662969..5664310	Cytokinin-O-glucosyltransferase 1, putative
LOC_Os06g10870	NA	NA	6	+	5665157..5666014	transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006810	biological_process	transport
GO:0006839	biological_process	mitochondrial transport
GO:0005739	cellular_component	mitochondrion
GO:0005743	cellular_component	mitochondrial inner membrane
GO:0005476	molecular_function	carnitine:acyl carnitine antiporter activity
GO:0005488	molecular_function	binding
GO:0005509	molecular_function	calcium ion binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.9395.1.S1_at--255--633	1	Chr06:5639926..5639950 (25 bp)	GATGCATTCAAAGTCATGGTTGGAT	LOC_Os06g10810
Os.9395.1.S1_at--217--793	1	Chr06:5639947..5640065 (25 bp)	GGATTGCCAACTACCGGTGGTGTTA	LOC_Os06g10810
Os.9395.1.S1_at--1089--235	1	Chr06:5640098..5640122 (25 bp)	AAAGCTGTCAGTGCCTGATTTTCTC	LOC_Os06g10810
Os.9395.1.S1_at--40--655	1	Chr06:5640114..5640138 (25 bp)	GATTTTCTCATTAGGACAACTTGGT	LOC_Os06g10810
Os.9395.1.S1_at--934--547	1	Chr06:5640147..5640171 (25 bp)	GAACTTATCGTTCTTCATGGATGGA	LOC_Os06g10810
Os.9395.1.S1_at--108--69	1	Chr06:5640227..5640251 (25 bp)	ATGACTATGTCATCTTTGGAATGAG	LOC_Os06g10810
Os.9395.1.S1_at--996--601	1	Chr06:5640249..5640273 (25 bp)	GAGAGGAACTCGTTAAAACAGACAA	LOC_Os06g10810
Os.9395.1.S1_at--1095--1007	1	Chr06:5640284..5640308 (25 bp)	TTTTTGTCCAAGTGTAAGTTCTAAT	LOC_Os06g10810
Os.9395.1.S1_at--574--1013	1	Chr06:5640441..5640465 (25 bp)	TATGCCATATCCAAGCAAAATCTAT	LOC_Os06g10810
Os.9395.1.S1_at--188--1009	1	Chr06:5640495..5640519 (25 bp)	TAGGAACCCAGATGGTTAGCGCACA	LOC_Os06g10810
Os.9395.1.S1_at--607--999	1	Chr06:5640511..5640535 (25 bp)	TAGCGCACAGGTTGTGTTCCATTTC	LOC_Os06g10810

Target Sequence

GATGCATTCAAAGTCATGGTTGGATTGCCAACTACCGGTGGTGTTACGCCAGCACCANNCCACTTNNNNNCANNGATGNN
NCTNNNGGANTTGAAAGCTGTCAGTGCCTGATTTTCTCATTAGGACAACTTGGTTATTTTTGGAACTTATCGTTCTTCAT
GGATGGAAAATATATTGGTCACATGAGTTCAATTATATTTTTGTTTAAAATTTTTGTAGAGGATGACTATGTCATCTTTG
GAATGAGAGGAACTCGTTAAAACAGACAATGATATATTTTTTTTGTCCAAGTGTAAGTTCTAATANTTGGTATAAAATAA
GATTTAGGAACTTGGTATTNCCTCCGNCCCTAAATATAAAGAATTTTGGTTGAATGTGACACATCCTAATACAACGAATT
TGGACAGGCTTNATGTCCACATTCATTGTNATAGGATATGCCATATCCAAGCAAAATCTATAAGGGACGGAGGGAGTATA
AAATAAGATTTAGGAACCCAGATGGTTAGCGCACAGGTTGTGTTCCATTTC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis