Browse Element(s) Details


Os.13510.1.S1_at

Description gb:AK120435.1
DB_XREF= gi:37990058
TID=Os.13510.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.13510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013097P16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013097P16, full insert sequence.
FL= gb:AK120435.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1076010/11emp24/gp25L/p24 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10720NANA6+5596521..5596826hypothetical protein
LOC_Os06g10730Os.36396.1.S1_at11/116+5600764..5603983expressed protein
LOC_Os06g10740OsAffx.12861.2.S1_x_at11/116+5607405..5610438hAT family dimerisation domain containing protein
LOC_Os06g10740OsAffx.12861.3.S1_x_at9/116+5607405..5610438hAT family dimerisation domain containing protein
LOC_Os06g10750OsAffx.20681.1.S1_s_at11/116+5613005..5615986nodulin MtN21 family protein, putative, expressed
LOC_Os06g10750OsAffx.20681.1.S1_at9/116+5613005..5615986nodulin MtN21 family protein, putative, expressed
LOC_Os06g10750OsAffx.3165.1.S1_at1/116+5613005..5615986nodulin MtN21 family protein, putative, expressed
LOC_Os06g10760Os.13510.1.S1_at10/116+5618151..5620735emp24/gp25L/p24 family protein, expressed
LOC_Os06g10770Os.4905.4.S1_a_at11/116+5620965..5624688N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os06g10770Os.4905.4.S1_at11/116+5620965..5624688N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os06g10780OsAffx.27557.2.S1_at11/116+5628417..5630683AP2 domain containing protein, expressed
LOC_Os06g10790Os.17411.1.S1_at11/116+5632355..5634722Protein kinase domain containing protein, expressed
LOC_Os06g10800NANA6+5635937..5636932Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g10810Os.9395.1.S1_at11/116+5637278..5640570Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os06g10820OsAffx.15360.1.S1_at11/116+5641246..5641881Helix-loop-helix DNA-binding domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0016020cellular_componentmembrane
GO:0008320molecular_functionprotein carrier activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13510.1.S1_at--139--7691Chr06:5619654..5619678 (25 bp)
GGGTCAGTTTGCGTTTACAACTTCA
LOC_Os06g10760
Os.13510.1.S1_at--431--8151Chr06:5619685..5619709 (25 bp)
GGAAATTACCTTGCGTGCTTCTGGC
LOC_Os06g10760
Os.13510.1.S1_at--303--9071Chr06:5619700..5619724 (25 bp)
TGCTTCTGGCTAGACAGTCCGGAGA
LOC_Os06g10760
Os.13510.1.S1_at--675--3291Chr06:5619773..5619797 (25 bp)
CAAAGGATTGGGACACTGTTGCTAA
LOC_Os06g10760
Os.13510.1.S1_at--321--2191Chr06:5620419..5620443 (25 bp)
ACAAATTCTAGGGTTGCATGGTTTA
LOC_Os06g10760
Os.13510.1.S1_at--1020--3491Chr06:5620435..5620459 (25 bp)
CATGGTTTAGCATCCTGTCACTGGG
LOC_Os06g10760
Os.13510.1.S1_at--14--511Chr06:5620467..5620491 (25 bp)
ATCGTGGTGTCCGTTTTGCAGTTGT
LOC_Os06g10760
Os.13510.1.S1_at--516--4951Chr06:5620493..5620517 (25 bp)
GCATCTTCAAGGGTTCTTCCGGAAG
LOC_Os06g10760
Os.13510.1.S1_at--367--6831Chr06:5620603..5620627 (25 bp)
GTTTAATTTCGAACAGCTCATGTGA
LOC_Os06g10760
Os.13510.1.S1_at--121--6631Chr06:5620640..5620664 (25 bp)
GTTGGTTGATACTCTATACATGAAT
LOC_Os06g10760
Os.13510.1.S1_at--154--7891Chr06:5620716..5620740 (25 bp)
GGTTCTGGAATTATTCAGCCAACTT
NONE
Target Sequence 
GGGTCAGTTTGCGTTTACAACTTCAGAAGCTGGAAATTACCTTGCGTGCTTCTGGCTAGACAGTCCGGAGAAAGGATCAG
GAGTATCNCTAAATCTTGATTGGAAGATAGGGATTGCGGCAAAGGATTGGGACACTGTTGCTAAGAAGGAAAAAATNGAG
GGTGTAGAACTAGAACTCAGGAANCTTGAAGCTGCGGTGGAATCCATNCATCACAATNTATTATATCTCAAAGCAAGGGA
AGCGGAGATGCGGACAGTGAGTGAGAAAACAAATTCTAGGGTTGCATGGTTTAGCATCCTGTCACTGGGNGTCTGCATCG
TGGTGTCCGTTTTGCAGTTGTNGCATCTTCAAGGGTTCTTCCGGAAGAAGAAGCTCATCTAAACCNATCACTTGTTTGAT
ATGTGTACTCCAGNGTTAACTTACCTTAGGAAAAAGGGAGAGTTTTTGTCATGTTTAATTTCGAACAGCTCATGTGANGG
TCAAATACAGTTGGTTGATACTCTATACATGAATTCAATAGCAATCAACCTTGTACTACTACTNNCGTGTGCAGAACATG
TTCAGAATTGGTTCTGGAATTATTCAGCCAACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis