Browse Element(s) Details


Os.4905.4.S1_at

Description gb:AK069709.1
DB_XREF= gi:32979733
TID=Os.4905.4
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4905 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0446G04.25 (P0446G04.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023028L23, full insert sequence.
FL= gb:AK060502.1 gb:AK069709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1077011/11N-acyl-L-amino-acid amidohydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10720NANA6+5596521..5596826hypothetical protein
LOC_Os06g10730Os.36396.1.S1_at11/116+5600764..5603983expressed protein
LOC_Os06g10740OsAffx.12861.2.S1_x_at11/116+5607405..5610438hAT family dimerisation domain containing protein
LOC_Os06g10740OsAffx.12861.3.S1_x_at9/116+5607405..5610438hAT family dimerisation domain containing protein
LOC_Os06g10750OsAffx.20681.1.S1_s_at11/116+5613005..5615986nodulin MtN21 family protein, putative, expressed
LOC_Os06g10750OsAffx.20681.1.S1_at9/116+5613005..5615986nodulin MtN21 family protein, putative, expressed
LOC_Os06g10750OsAffx.3165.1.S1_at1/116+5613005..5615986nodulin MtN21 family protein, putative, expressed
LOC_Os06g10760Os.13510.1.S1_at10/116+5618151..5620735emp24/gp25L/p24 family protein, expressed
LOC_Os06g10770Os.4905.4.S1_a_at11/116+5620965..5624688N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os06g10770Os.4905.4.S1_at11/116+5620965..5624688N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os06g10780OsAffx.27557.2.S1_at11/116+5628417..5630683AP2 domain containing protein, expressed
LOC_Os06g10790Os.17411.1.S1_at11/116+5632355..5634722Protein kinase domain containing protein, expressed
LOC_Os06g10800NANA6+5635937..5636932Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g10810Os.9395.1.S1_at11/116+5637278..5640570Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os06g10820OsAffx.15360.1.S1_at11/116+5641246..5641881Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g10830NANA6+5647265..5649907transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0004046molecular_functionaminoacylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4905.4.S1_at--230--5431Chr06:5624283..5624307 (25 bp)
GAAGCCACCCTCAAAGATACAGTTT
LOC_Os06g10770
Os.4905.4.S1_at--527--6811Chr06:5624304..5624328 (25 bp)
GTTTTCTCAGAAATGGTTCAGGCCC
LOC_Os06g10770
Os.4905.4.S1_at--343--6751Chr06:5624319..5624343 (25 bp)
GTTCAGGCCCAACCATACCATAATA
LOC_Os06g10770
Os.4905.4.S1_at--786--4951Chr06:5624368..5624392 (25 bp)
GCATATCTGCTGAACATTGTATTTT
LOC_Os06g10770
Os.4905.4.S1_at--874--6451Chr06:5624410..5624434 (25 bp)
GATCAATCTGTACACATATACGAAT
LOC_Os06g10770
Os.4905.4.S1_at--695--9931Chr06:5624428..5624452 (25 bp)
TACGAATTTATGAACTGCGACAGTG
LOC_Os06g10770
Os.4905.4.S1_at--915--7491Chr06:5624452..5624476 (25 bp)
GTGGTGTTCAAGTCCACGGCTGGAT
LOC_Os06g10770
Os.4905.4.S1_at--70--1951Chr06:5624467..5624491 (25 bp)
ACGGCTGGATTGGTCTACCTGTAGT
LOC_Os06g10770
Os.4905.4.S1_at--312--31Chr06:5624475..5624499 (25 bp)
ATTGGTCTACCTGTAGTTCTGCTGG
LOC_Os06g10770
Os.4905.4.S1_at--833--10771Chr06:5624515..5624539 (25 bp)
TTGGGAAACCACATCCGCGTTTTCT
LOC_Os06g10770
Os.4905.4.S1_at--1134--5451Chr06:5624569..5624593 (25 bp)
GAACTGTCATGTATCACTACGAACC
LOC_Os06g10770
Target Sequence 
GAAGCCACCCTCAAAGATACAGTTTTCTCAGAAATGGTTCAGGCCCAACCATACCATAATAAACATGTTGGGAATTGGGA
ATAATGCATATCTGCTGAACATTGTATTTTTAATGATTGTGTAAGCAGATCAATCTGTACACATATACGAATTTATGAAC
TGCGACAGTGTGGTGTTCAAGTCCACGGCTGGATTGGTCTACCTGTAGTTCTGCTGGNTTTTATCTGNTNNNTTTGGGAA
ACCACATCCGCGTTTTCTCTTGGCATTTTTTTNNNNNNTTGCCNATTGAACTGTCATGTATCACTACGAACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4905.4.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis