Browse Element(s) Details


OsAffx.27557.2.S1_at

Description tigr:9634.m01051
TID=OsAffx.27557.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1078011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10730Os.36396.1.S1_at11/116+5600764..5603983expressed protein
LOC_Os06g10740OsAffx.12861.2.S1_x_at11/116+5607405..5610438hAT family dimerisation domain containing protein
LOC_Os06g10740OsAffx.12861.3.S1_x_at9/116+5607405..5610438hAT family dimerisation domain containing protein
LOC_Os06g10750OsAffx.20681.1.S1_s_at11/116+5613005..5615986nodulin MtN21 family protein, putative, expressed
LOC_Os06g10750OsAffx.20681.1.S1_at9/116+5613005..5615986nodulin MtN21 family protein, putative, expressed
LOC_Os06g10750OsAffx.3165.1.S1_at1/116+5613005..5615986nodulin MtN21 family protein, putative, expressed
LOC_Os06g10760Os.13510.1.S1_at10/116+5618151..5620735emp24/gp25L/p24 family protein, expressed
LOC_Os06g10770Os.4905.4.S1_a_at11/116+5620965..5624688N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os06g10770Os.4905.4.S1_at11/116+5620965..5624688N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os06g10780OsAffx.27557.2.S1_at11/116+5628417..5630683AP2 domain containing protein, expressed
LOC_Os06g10790Os.17411.1.S1_at11/116+5632355..5634722Protein kinase domain containing protein, expressed
LOC_Os06g10800NANA6+5635937..5636932Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g10810Os.9395.1.S1_at11/116+5637278..5640570Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os06g10820OsAffx.15360.1.S1_at11/116+5641246..5641881Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g10830NANA6+5647265..5649907transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10840NANA6+5652539..5652943hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27557.2.S1_at--167--6231Chr06:5630405..5630429 (25 bp)
GAGGCCAGCACACCTGCCTGCAGCT
LOC_Os06g10780
OsAffx.27557.2.S1_at--896--9031Chr06:5630423..5630447 (25 bp)
TGCAGCTCCAGCGATGGTGCCGCCT
LOC_Os06g10780
OsAffx.27557.2.S1_at--656--7371Chr06:5630459..5630483 (25 bp)
GTGAGCTCCCCGGAGACGGTCATCA
LOC_Os06g10780
OsAffx.27557.2.S1_at--301--5991Chr06:5630471..5630495 (25 bp)
GAGACGGTCATCAGCGACGTCGACG
LOC_Os06g10780
OsAffx.27557.2.S1_at--380--1931Chr06:5630474..5630498 (25 bp)
ACGGTCATCAGCGACGTCGACGTGG
LOC_Os06g10780
OsAffx.27557.2.S1_at--759--1911Chr06:5630493..5630517 (25 bp)
ACGTGGACTACAGCTTGCTCGCCGA
LOC_Os06g10780
OsAffx.27557.2.S1_at--910--5691Chr06:5630498..5630522 (25 bp)
GACTACAGCTTGCTCGCCGACATCG
LOC_Os06g10780
OsAffx.27557.2.S1_at--847--6191Chr06:5630522..5630546 (25 bp)
GAGGCGTTCTTCCAGTCTCCCAAGT
LOC_Os06g10780
OsAffx.27557.2.S1_at--1147--1131Chr06:5630535..5630559 (25 bp)
AGTCTCCCAAGTGCATGGAGTACGC
LOC_Os06g10780
OsAffx.27557.2.S1_at--98--9331Chr06:5630539..5630563 (25 bp)
TCCCAAGTGCATGGAGTACGCCATG
LOC_Os06g10780
OsAffx.27557.2.S1_at--783--831Chr06:5630564..5630588 (25 bp)
ATGGACCCGTGCAGCGCGTTCTTCG
LOC_Os06g10780
Target Sequence 
GAGGCCAGCACACCTGCCTGCAGCTCCAGCGATGGTGCCGCCTCGCCGTCGCCGGTGAGCTCCCCGGAGACGGTCATCAG
CGACGTCGACGTGGACTACAGCTTGCTCGCCGACATCGAGGCGTTCTTCCAGTCTCCCAAGTGCATGGAGTACGCCATGA
TGGACCCGTGCAGCGCGTTCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27557.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis