Browse Element(s) Details


OsAffx.15360.1.S1_at

Description tigr:9634.m01054
TID=OsAffx.15360.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Helix-loop-helix DNA-binding domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1082011/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10760Os.13510.1.S1_at10/116+5618151..5620735emp24/gp25L/p24 family protein, expressed
LOC_Os06g10770Os.4905.4.S1_a_at11/116+5620965..5624688N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os06g10770Os.4905.4.S1_at11/116+5620965..5624688N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os06g10780OsAffx.27557.2.S1_at11/116+5628417..5630683AP2 domain containing protein, expressed
LOC_Os06g10790Os.17411.1.S1_at11/116+5632355..5634722Protein kinase domain containing protein, expressed
LOC_Os06g10800NANA6+5635937..5636932Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g10810Os.9395.1.S1_at11/116+5637278..5640570Phosphate carrier protein, mitochondrial precursor, putative, expressed
LOC_Os06g10820OsAffx.15360.1.S1_at11/116+5641246..5641881Helix-loop-helix DNA-binding domain containing protein
LOC_Os06g10830NANA6+5647265..5649907transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g10840NANA6+5652539..5652943hypothetical protein
LOC_Os06g10850Os.56712.1.S1_at11/116+5656851..5660264Lipase family protein, expressed
LOC_Os06g10860OsAffx.27558.1.S1_at11/116+5662969..5664310Cytokinin-O-glucosyltransferase 1, putative
LOC_Os06g10870NANA6+5665157..5666014transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15360.1.S1_at--717--8071Chr06:5641281..5641305 (25 bp)
GGAGCAGCTCATGCACATCATCTCA
LOC_Os06g10820
OsAffx.15360.1.S1_at--1052--5111Chr06:5641293..5641317 (25 bp)
GCACATCATCTCACAGCTAGACAGT
LOC_Os06g10820
OsAffx.15360.1.S1_at--1080--10011Chr06:5641310..5641334 (25 bp)
TAGACAGTGCACTGGCGAGCTCGCC
LOC_Os06g10820
OsAffx.15360.1.S1_at--974--7091Chr06:5641374..5641398 (25 bp)
GTCACCGGCGGCTCATGTTCCAGTA
LOC_Os06g10820
OsAffx.15360.1.S1_at--122--1191Chr06:5641395..5641419 (25 bp)
AGTACCTCCAGGTCTACTCAACACT
LOC_Os06g10820
OsAffx.15360.1.S1_at--486--7791Chr06:5641405..5641429 (25 bp)
GGTCTACTCAACACTACGATGGTTT
LOC_Os06g10820
OsAffx.15360.1.S1_at--649--9931Chr06:5641419..5641443 (25 bp)
TACGATGGTTTCTACTTCTCGAGCT
LOC_Os06g10820
OsAffx.15360.1.S1_at--199--831Chr06:5641423..5641447 (25 bp)
ATGGTTTCTACTTCTCGAGCTCAAG
LOC_Os06g10820
OsAffx.15360.1.S1_at--419--4371Chr06:5641481..5641505 (25 bp)
CCACGGCTGCGGTGCAGTCGTCGTC
LOC_Os06g10820
OsAffx.15360.1.S1_at--841--7531Chr06:5641509..5641533 (25 bp)
GGGCATTATGTACACGACGACGCGC
LOC_Os06g10820
OsAffx.15360.1.S1_at--1033--9711Chr06:5641751..5641775 (25 bp)
TCAAGGGCCACGTCCAGTCGCTGGA
LOC_Os06g10820
Target Sequence 
GGAGCAGCTCATGCACATCATCTCACAGCTAGACAGTGCACTGGCGAGCTCGCCTTCTCCATCCACGTCGCCGTCGGCGT
CGCCGCCGCGACAGTCACCGGCGGCTCATGTTCCAGTACCTCCAGGTCTACTCAACACTACGATGGTTTCTACTTCTCGA
GCTCAAGCGGCGCCGTCGGCGCCGTTGCATCCGGTCGCCGCCACGGCTGCGGTGCAGTCGTCGTCGCGGGGCATTATGTA
CACGACGACGCGCCAGGGCGTCATCGACGCGGCGGAGGAGGAGGAGGCGGCGGCGCCGCGGCCGCGGCGGCGCAACGCGC
GGGTGTCGAGCGAGCCGCAGAGCGTGGCGGCGAGGCTGCGTCGGGAGCGCGTGAGCCAGCGGATGCGCGCGCTGCAGCGG
CTCGTCCCCGGCGGCGCGAGGCTGGACACGGCGTCCATGCTGGAGGAGGCCATCCGCTACGTCAAGTTCCTCAAGGGCCA
CGTCCAGTCGCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis