Browse Element(s) Details


OsAffx.4792.1.S1_at

Description tigr:9634.m01045
TID=OsAffx.4792.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1071011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g10670NANA6+5568911..5570472Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g10680OsAffx.4791.1.S1_at10/116+5571600..5572851hypothetical protein
LOC_Os06g10690Os.9899.1.S1_at11/116+5574869..5583374C1-like domain containing protein, expressed
LOC_Os06g10690Os.9899.1.S2_at11/116+5574869..5583374C1-like domain containing protein, expressed
LOC_Os06g10700NANA6+5585612..5585902hypothetical protein
LOC_Os06g10710OsAffx.4792.1.S1_at11/116+5587422..5588312hypothetical protein
LOC_Os06g10720NANA6+5596521..5596826hypothetical protein
LOC_Os06g10730Os.36396.1.S1_at11/116+5600764..5603983expressed protein
LOC_Os06g10740OsAffx.12861.2.S1_x_at11/116+5607405..5610438hAT family dimerisation domain containing protein
LOC_Os06g10740OsAffx.12861.3.S1_x_at9/116+5607405..5610438hAT family dimerisation domain containing protein
LOC_Os06g10750OsAffx.20681.1.S1_s_at11/116+5613005..5615986nodulin MtN21 family protein, putative, expressed
LOC_Os06g10750OsAffx.20681.1.S1_at9/116+5613005..5615986nodulin MtN21 family protein, putative, expressed
LOC_Os06g10750OsAffx.3165.1.S1_at1/116+5613005..5615986nodulin MtN21 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4792.1.S1_at--1109--8391Chr06:5587797..5587821 (25 bp)
GGCGCGCTGTTCGAGTCCCTCAGGG
LOC_Os06g10710
OsAffx.4792.1.S1_at--80--2771Chr06:5588038..5588062 (25 bp)
AAGAGGGATACATCGGTGGCAATCT
LOC_Os06g10710
OsAffx.4792.1.S1_at--402--7531Chr06:5588053..5588077 (25 bp)
GTGGCAATCTGCATGTTTCGGTGAG
LOC_Os06g10710
OsAffx.4792.1.S1_at--731--9051Chr06:5588062..5588086 (25 bp)
TGCATGTTTCGGTGAGGCTTCCGGT
LOC_Os06g10710
OsAffx.4792.1.S1_at--785--7451Chr06:5588088..5588112 (25 bp)
GTGTCGGAGGTGCTTGGTGATTACT
LOC_Os06g10710
OsAffx.4792.1.S1_at--902--9051Chr06:5588098..5588122 (25 bp)
TGCTTGGTGATTACTGGAGGAAGAA
LOC_Os06g10710
OsAffx.4792.1.S1_at--217--7471Chr06:5588128..5588152 (25 bp)
GTGTGCTGTCAGGTGTCTCGCTTGA
LOC_Os06g10710
OsAffx.4792.1.S1_at--376--9131Chr06:5588131..5588155 (25 bp)
TGCTGTCAGGTGTCTCGCTTGAGAG
LOC_Os06g10710
OsAffx.4792.1.S1_at--937--8871Chr06:5588195..5588219 (25 bp)
TGAGGCAAAGTGGAAGCGGCAGCTT
LOC_Os06g10710
OsAffx.4792.1.S1_at--846--8251Chr06:5588212..5588236 (25 bp)
GGCAGCTTGAAGTGGAGACGCAGAC
LOC_Os06g10710
OsAffx.4792.1.S1_at--1083--191Chr06:5588254..5588278 (25 bp)
ATTTGGCGAAGGAGGTCTGCGCCAT
LOC_Os06g10710
Target Sequence 
GGCGCGCTGTTCGAGTCCCTCAGGGGCTCCATCTCCTCCCACATCGACCAGGCCAAGGTGTACTACAAGCTGAAGCGGAA
CAAGAGCAAGTTCCTGCACGCCCCACCGGAGGCCACCACCACCACCCCGCACGATCGCCGGGTGCGCGCGCTCTCCGCGG
AGCTCTGGGGCAGCGAGCTCGCGCCGCCCGCTGTAGAGGGCGACGCGGATGCAGCCGAGGCGGCCGACGAGAGGGACGCC
GAAGAGGGATACATCGGTGGCAATCTGCATGTTTCGGTGAGGCTTCCGGTGGTGTCGGAGGTGCTTGGTGATTACTGGAG
GAAGAATGGGCGTGTGCTGTCAGGTGTCTCGCTTGAGAGGGGGTTGGCTCTGGTTGGGCCGGAGGAGGGTAGGATGGCTG
AGGCAAAGTGGAAGCGGCAGCTTGAAGTGGAGACGCAGACGCAGGGGCGCCGGCACGATTTGGCGAAGGAGGTCTGCGCC
AT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis