Browse Element(s) Details


Os.28056.1.S1_at

Description gb:AK058856.1
DB_XREF= gi:32968874
TID=Os.28056.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28056 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative proton pump (OSJNBa0029P16.14), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-005-B12, full insert sequence.
FL= gb:AK058856.1 gb:AK060235.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1050011/11V-type ATPase 116kDa subunit family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g10480Os.46714.1.S1_at11/1110+5525792..5533426expressed protein
LOC_Os10g10480Os.16112.1.S1_s_at1/1110+5525792..5533426expressed protein
LOC_Os10g10490OsAffx.8414.1.S1_at11/1110+5537020..5538433retrotransposon protein, putative, unclassified
LOC_Os10g10500Os.28056.1.S1_at11/1110+5546932..5555416V-type ATPase 116kDa subunit family protein, expressed
LOC_Os10g10500Os.49542.1.S1_at1/1110+5546932..5555416V-type ATPase 116kDa subunit family protein, expressed
LOC_Os10g10510OsAffx.18204.1.S1_at11/1110+5560629..5561988hypothetical protein
LOC_Os10g10510Os.6227.2.S1_x_at1/1110+5560629..5561988hypothetical protein
LOC_Os10g10520NANA10+5566285..5569075Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28056.1.S1_at--33--451Chr10:5554877..5554901 (25 bp)
ATCTTTCTCTTTGCCACTATTGGTG
LOC_Os10g10500
Os.28056.1.S1_at--400--611Chr10:5554938..5554962 (25 bp)
ATGCTCTGAGGCTCCACTGGGTGGA
LOC_Os10g10500
Os.28056.1.S1_at--424--9851Chr10:5554994..5555018 (25 bp)
TACAAGTTTGTACCCTTTGCTTTCG
LOC_Os10g10500
Os.28056.1.S1_at--973--10271Chr10:5555009..5555033 (25 bp)
TTTGCTTTCGCATCAATCATCGAGG
LOC_Os10g10500
Os.28056.1.S1_at--523--2951Chr10:5555077..5555101 (25 bp)
AATCGTAAGAGTCCTTCCCTTGAAT
LOC_Os10g10500
Os.28056.1.S1_at--475--2431Chr10:5555135..5555159 (25 bp)
AAAACCCCAGTTCGTTGTGTCTGAG
LOC_Os10g10500
Os.28056.1.S1_at--499--2271Chr10:5555171..5555195 (25 bp)
AAATCATTCTTTTTTGCCTACACGA
LOC_Os10g10500
Os.28056.1.S1_at--309--10291Chr10:5555183..5555207 (25 bp)
TTTGCCTACACGATTAGCCATGCTA
LOC_Os10g10500
Os.28056.1.S1_at--367--1691Chr10:5555198..5555222 (25 bp)
AGCCATGCTAGGTTATTCTGTATAT
LOC_Os10g10500
Os.28056.1.S1_at--586--7152Chr10:5555281..5555305 (25 bp)
GTCTAGTGCATAGCATAACTGCCTT
LOC_Os10g10500
Os.28056.1.S1_at--590--1231Chr10:5555330..5555354 (25 bp)
AGTTCTGTACTCATGGCTGTGACAC
LOC_Os10g10500
Target Sequence 
ATCTTTCTCTTTGCCACTATTGGTGTCTTACTTGTGATGGNAGACCCTAAGTGCATTCTTGCATGCTCTGAGGCTCCACT
GGGTGGAGTTCCAGAACAAGTTTTACGAGGGTGATGGATACAAGTTTGTACCCTTTGCTTTCGCATCAATCATCGAGGAG
GAAGATTGAATCTGAATTGTTGTATGTAATCTAGAATGTAAAATCGTAAGAGTCCTTCCCTTGAATAATCATTGTTTATC
ACCATTGGTGAAGATTCAGAAAACCCCAGTTCGTTGTGTCTGAGCAGGGGATGCCAAATCATTCTTTTTTGCCTACACGA
TTAGCCATGCTAGGTTATTCTGTATATTATGATCTGTTATTACTTTGAGCGGTGACAGGAGCGGCTGGGACGAAGTTGCA
AATAAGTCTAGTGCATAGCATAACTGCCTTTTTACATGGTGCTATGTTAATAAAAGTTCTGTACTCATGGCTGTGACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28056.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis