Browse Element(s) Details


Os.28098.1.S1_at

Description gb:AK067249.1
DB_XREF= gi:32977267
TID=Os.28098.1
CNT=17
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.28098 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative amylase (OSJNBa0006L06.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098M02, full insert sequence.
FL= gb:AK067249.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3281011/11Glycosyl hydrolase family 14 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g32760OsAffx.28308.2.S1_x_at11/1110+16826112..16828353von Willebrand factor type A domain containing protein, expressed
LOC_Os10g32770Os.46667.1.S1_x_at11/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32770Os.24696.1.A1_s_at10/1110+16828724..16833806WD-repeat protein 26, putative, expressed
LOC_Os10g32780Os.21180.2.S1_x_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32780OsAffx.23573.1.S1_s_at11/1110+16837350..16837759RING zinc finger ankyrin protein, putative
LOC_Os10g32790OsAffx.30645.1.S1_at10/1110+16839866..16841873hypothetical protein
LOC_Os10g32800OsAffx.18494.1.S1_at11/1110+16846326..16849108hypothetical protein
LOC_Os10g32810Os.28098.1.S1_at11/1110+16851369..16854068Glycosyl hydrolase family 14 protein, expressed
LOC_Os10g32820Os.2247.1.S1_at11/1110+16854922..1685645460S ribosomal protein L21, putative, expressed
LOC_Os10g32830Os.23241.2.S1_x_at11/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_x_at7/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32830Os.23241.1.S1_at5/1110+16857216..16860503kinase, pfkB family protein
LOC_Os10g32840NANA10+16861914..16862491hypothetical protein
LOC_Os10g32850Os.10946.1.S1_at11/1110+16862955..16866271expressed protein
LOC_Os10g32860OsAffx.30646.1.S1_at11/1110+16869048..16871141hypothetical protein
LOC_Os10g32870Os.46562.1.S1_at11/1110+16872128..16873689ribosomal protein L11 containing protein, expressed
LOC_Os10g32880Os.37656.1.S1_at11/1110+16874196..16881229PRP19/PSO4 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005983biological_processstarch catabolism
GO:0009570cellular_componentchloroplast stroma
GO:0016161molecular_functionbeta-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28098.1.S1_at--817--5911Chr10:16853487..16853511 (25 bp)
GAGCTAGCACGGTCAGACGCTCATA
LOC_Os10g32810
Os.28098.1.S1_at--133--7831Chr10:16853497..16853521 (25 bp)
GGTCAGACGCTCATATACACCGTCG
LOC_Os10g32810
Os.28098.1.S1_at--293--9831Chr10:16853512..16853536 (25 bp)
TACACCGTCGCCTCGAGGTCGGATT
LOC_Os10g32810
Os.28098.1.S1_at--35--7811Chr10:16853528..16853552 (25 bp)
GGTCGGATTCCGATGTGGGATCATT
LOC_Os10g32810
Os.28098.1.S1_at--534--791Chr10:16853540..16853564 (25 bp)
ATGTGGGATCATTCGATCTCCCTTT
LOC_Os10g32810
Os.28098.1.S1_at--837--9451Chr10:16853645..16853669 (25 bp)
TCTGGAGGTCGAAGAGAGCGTCATT
LOC_Os10g32810
Os.28098.1.S1_at--1146--5351Chr10:16853655..16853679 (25 bp)
GAAGAGAGCGTCATTTTCCTCCCGT
LOC_Os10g32810
Os.28098.1.S1_at--524--171Chr10:16853667..16853691 (25 bp)
ATTTTCCTCCCGTTGAAGATCACGA
LOC_Os10g32810
Os.28098.1.S1_at--470--5351Chr10:16853681..16853705 (25 bp)
GAAGATCACGAATCATTTACGTTAG
LOC_Os10g32810
Os.28098.1.S1_at--597--2471Chr10:16853737..16853761 (25 bp)
AACACACACACACTGGCACTCAAAA
LOC_Os10g32810
Os.28098.1.S1_at--40--8251Chr10:16853751..16853775 (25 bp)
GGCACTCAAAAGTTGTTGTCACGCT
LOC_Os10g32810
Target Sequence 
GAGCTAGCACGGTCAGACGCTCATATACACCGTCGCCTCGAGGTCGGATTCCGATGTGGGATCATTCGATCTCCCTTTTT
TTTTTCTTCTTTTTGCCATTTTGTACAGCCTTTTGGGGAGCTTTGGATTTGTGCTTTTTGTCTCGGGAGGAAAACCGCTC
TGGAGGTCGAAGAGAGCGTCATTTTCCTCCCGTTGAAGATCACGAATCATTTACGTTAGAGATGATGTAATTAAGCAGGG
AGGGGAGGGGAACACACACACACTGGCACTCAAAAGTTGTTGTCACGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28098.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis