Browse Element(s) Details


Os.28127.1.S1_at

Description gb:AK068401.1
DB_XREF= gi:32978419
TID=Os.28127.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033045D18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013149F23, full insert sequence.
FL= gb:AK068401.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1290011/11Squalene monooxygenase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12860OsAffx.25077.1.S1_at11/113+6910822..6912441Homeobox associated leucine zipper family protein, expressed
LOC_Os03g12860Os.49754.1.S1_x_at10/113+6910822..6912441Homeobox associated leucine zipper family protein, expressed
LOC_Os03g12870Os.27542.1.A1_at1/113+6919618..6921929hypothetical protein
LOC_Os03g12879Os.49137.1.S1_at11/113+6922092..6923188expressed protein
LOC_Os03g12890Os.10150.1.S1_at11/113+6927108..6930064Branched-chain-amino-acid aminotransferase 5, chloroplast precursor, putative, expressed
LOC_Os03g12900Os.28127.2.S1_at11/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12900Os.28127.1.S1_at11/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12900OsAffx.8676.1.S1_at1/113+6929972..6936503Squalene monooxygenase, putative, expressed
LOC_Os03g12910Os.20969.1.S1_at11/113+6936767..6941707Squalene monooxygenase, putative, expressed
LOC_Os03g12920NANA3+6945583..6946134hypothetical protein
LOC_Os03g12930OsAffx.25078.1.S1_s_at11/113+6953876..6957221expressed protein
LOC_Os03g12930OsAffx.25078.1.S1_at11/113+6953876..6957221expressed protein
LOC_Os03g12930Os.54564.1.S1_at10/113+6953876..6957221expressed protein
LOC_Os03g12940OsAffx.25079.1.S1_at11/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12940Os.52614.1.S1_at11/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os03g12940Os.8509.1.S1_at1/113+6959904..6968702Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016126biological_processsterol biosynthesis
GO:0004506molecular_functionsqualene monooxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28127.1.S1_at--277--6091Chr03:6932074..6932098 (25 bp)
GAGTAAGAATCTCCATGTTAGCCTA
LOC_Os03g12900
Os.28127.1.S1_at--305--8791Chr03:6932059..6932083 (25 bp)
TGTTAGCCTATGGTGTTTGCTGTTC
LOC_Os03g12900
Os.28127.1.S1_at--949--3671Chr03:6932035..6932059 (25 bp)
CTTTAGTTCTTTTGAGCTGTCGAGT
LOC_Os03g12900
Os.28127.1.S1_at--90--6091Chr03:6932000..6932024 (25 bp)
GAGTAGTCTGTTCTTCCTATAGGAA
LOC_Os03g12900
Os.28127.1.S1_at--1054--9891Chr03:6931951..6931975 (25 bp)
TACTAAGTTGTATATCCCTCTGAAC
LOC_Os03g12900
Os.28127.1.S1_at--147--5491Chr03:6931930..6931954 (25 bp)
GAACTTGCTAATGCGTCTTGCTCAT
LOC_Os03g12900
Os.28127.1.S1_at--385--4651Chr03:6931918..6931942 (25 bp)
GCGTCTTGCTCATTATCTCTTTTAG
LOC_Os03g12900
Os.28127.1.S1_at--881--231Chr03:6931892..6931916 (25 bp)
ATATTTGAGGTGCTCTGCTTGTCTC
LOC_Os03g12900
Os.28127.1.S1_at--1011--8711Chr03:6931873..6931897 (25 bp)
TGTCTCTACTGCACCGTTGGAATGA
LOC_Os03g12900
Os.28127.1.S1_at--185--4871Chr03:6931848..6931872 (25 bp)
GCTAGTTCCTTGTTTTTATGGGCAC
LOC_Os03g12900
Os.28127.1.S1_at--75--2151Chr03:6931825..6931849 (25 bp)
ACACTTCCTAAATGCCACGCTTTTT
LOC_Os03g12900
Target Sequence 
GAGTAAGAATCTCCATGTTAGCCTATGGTGTTTGCTGTTCTTTAGTTCTTTTGAGCTGTCGAGTGTGCTCATTAGAGTAG
TCTGTTCTTCCTATAGGAAATTGGGATGTGTATCGATTGTCAATACTAAGTTGTATATCCCTCTGAACTTGCTAATGCGT
CTTGCTCATTATCTCTTTTAGAATATTTGAGGTGCTCTGCTTGTCTCTACTGCACCGTTGGAATGAGCTAGTTCCTTGTT
TTTATGGGCACACTTCCTAAATGCCACGCTTTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis