Browse Element(s) Details


Os.28148.1.S1_at

Description gb:AK073633.1
DB_XREF= gi:32983656
TID=Os.28148.1
CNT=40
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.28148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033048G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033048G12, full insert sequence.
FL= gb:AK062070.1 gb:AK073633.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1144011/11Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g11410Os.10891.1.S1_at2/113+5849271..5853928Mitochondrial processing peptidase beta subunit, mitochondrial precursor, putative, expressed
LOC_Os03g11420Os.15799.1.S1_at11/113+5855359..5862419Glycosyl hydrolase family 1 protein, expressed
LOC_Os03g11430OsAffx.12826.1.S1_at11/113+5870390..5872403hypothetical protein
LOC_Os03g11440Os.28148.1.S1_at11/113+5875150..5878645Protein transport protein Sec61 alpha subunit isoform 2, putative, expressed
LOC_Os03g11450OsAffx.25057.1.S1_at11/113+5879212..5881407hypothetical protein
LOC_Os03g11460Os.5352.1.S1_at10/113+5886818..5896168expressed protein
LOC_Os03g11470Os.26874.1.S1_at11/113+5899030..5910488Activating signal cointegrator 1 complex subunit 3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009306biological_processprotein secretion
GO:0016020cellular_componentmembrane
GO:0015450molecular_functionprotein translocase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28148.1.S1_at--1077--931Chr03:5878146..5878170 (25 bp)
AGGAACTGGGATACTGCTCGCTGTT
LOC_Os03g11440
Os.28148.1.S1_at--243--1991Chr03:5878158..5878182 (25 bp)
ACTGCTCGCTGTTACAATCATCTAC
LOC_Os03g11440
Os.28148.1.S1_at--744--5571Chr03:5878207..5878231 (25 bp)
GAAAGGGCTACCGAGCTAGGTTTCT
LOC_Os03g11440
Os.28148.1.S1_at--1122--4851Chr03:5878221..5878245 (25 bp)
GCTAGGTTTCTTTGGGTTTTGATCA
LOC_Os03g11440
Os.28148.1.S1_at--92--7691Chr03:5878234..5878258 (25 bp)
GGGTTTTGATCACCTTAGCTGTATA
LOC_Os03g11440
Os.28148.1.S1_at--597--4731Chr03:5878251..5878275 (25 bp)
GCTGTATAACTCCTAGCTGGAACTT
LOC_Os03g11440
Os.28148.1.S1_at--863--4711Chr03:5878266..5878290 (25 bp)
GCTGGAACTTCTTGCGAGTCGCAGT
LOC_Os03g11440
Os.28148.1.S1_at--780--91Chr03:5878506..5878530 (25 bp)
ATTCCTGATCTCTTTTTTGCTGCAA
LOC_Os03g11440
Os.28148.1.S1_at--75--10711Chr03:5878522..5878546 (25 bp)
TTGCTGCAACCTTCGTGACTAATGT
LOC_Os03g11440
Os.28148.1.S1_at--1036--2011Chr03:5878562..5878586 (25 bp)
ACTAATCTGGTGTTATGTCTCCCTG
LOC_Os03g11440
Os.28148.1.S1_at--789--3831Chr03:5878584..5878608 (25 bp)
CTGCTGCTTCTCTTATTGCAAGTGT
LOC_Os03g11440
Target Sequence 
AGGAACTGGGATACTGCTCGCTGTTACAATCATCTACCAGTATTTTGAGACATTCGAGAAAGAAAGGGCTACCGAGCTAG
GTTTCTTTGGGTTTTGATCACCTTAGCTGTATAACTCCTAGCTGGAACTTCTTGCGAGTCGCAGTGCTGCTTGGCCGGCT
GTCATGTAATGGGAGACCTCAGAATCAGCTTAGGTTGCCGACTTACTTACAATGAGAATCTTGTAGCAGTATGCGTTTTG
TTCATGCCAGTGTATGGAGTTATTTGTCCTGCTCCTGCCCCGAGTACAGCAATGGCCATCGTAGTAACTGGATGTGTTGC
GATCAATTTTTATTATCTTTTAAACTGGATAGTATATTTGATTCCTGATCTCTTTTTTGCTGCAACCTTCGTGACTAATG
TTTCTNATCACTGGAAACTAATCTGGTGTTATGTCTCCCTGCTGCTTCTCTTATTGCAAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis