Browse Element(s) Details


Os.28207.1.S1_at

Description gb:AK063442.1
DB_XREF= gi:32973460
TID=Os.28207.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.28207 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1147B04.8 (B1147B04.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-115-F02, full insert sequence.
FL= gb:AK063442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3420010/11rRNA processing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34150OsAffx.11311.1.S1_x_at11/111+19158127..19158447hypothetical protein
LOC_Os01g34164NANA1+19167434..19167644NA
LOC_Os01g34180NANA1+19168229..19168432hypothetical protein
LOC_Os01g34190Os.17820.1.A1_at11/111+19175205..19178661G-patch domain containing protein, expressed
LOC_Os01g34200Os.28207.1.S1_at10/111+19180422..19184170rRNA processing protein, putative, expressed
LOC_Os01g34220OsAffx.2150.1.S1_at11/111+19196558..19197580F-box domain containing protein
LOC_Os01g34230Os.46025.1.S1_at11/111+19202362..19203183hypothetical protein
LOC_Os01g34240NANA1+19205536..19206075hypothetical protein
LOC_Os01g34250OsAffx.22385.1.S1_x_at2/111+19206551..19210963retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g34250OsAffx.20329.1.S1_at1/111+19206551..19210963retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28207.1.S1_at--441--5011NONE
GCAGGCGCATCTGAGTCAGCATTTT
NONE
Os.28207.1.S1_at--308--2431Chr01:19183541..19183565 (25 bp)
AAAACTGGTTGATCGTCGTGCTTCG
LOC_Os01g34200
Os.28207.1.S1_at--1038--6451Chr01:19183700..19183720 (21 bp)
GATAAGATACCATGTCCACGAGAAG
LOC_Os01g34200
Os.28207.1.S1_at--413--6991Chr01:19183742..19183766 (25 bp)
GTACCCATGGTTATTCCTCCAATGG
LOC_Os01g34200
Os.28207.1.S1_at--1150--2311Chr01:19183807..19183831 (25 bp)
AAAGTCGACCACAGCGTGAATGCTT
LOC_Os01g34200
Os.28207.1.S1_at--475--5751Chr01:19183860..19183884 (25 bp)
GACGTATAACCCTTTCTTGACTTAT
LOC_Os01g34200
Os.28207.1.S1_at--1096--2291Chr01:19183885..19183909 (25 bp)
AAAGGCCAGTCGTGTCTCGTAAAGA
LOC_Os01g34200
Os.28207.1.S1_at--963--2231Chr01:19183923..19183947 (25 bp)
AAATTCGATGGTATCCGTGTTGGAC
LOC_Os01g34200
Os.28207.1.S1_at--1127--7611Chr01:19183950..19183974 (25 bp)
GGGAACTGCATTTCGATTCATACTC
LOC_Os01g34200
Os.28207.1.S1_at--146--5191Chr01:19183986..19184010 (25 bp)
GCAATCTGGTTCTTAACTGACGAGT
LOC_Os01g34200
Os.28207.1.S1_at--490--6551Chr01:19184083..19184107 (25 bp)
GATTATCAGTTGAGGTCGTTTCATA
LOC_Os01g34200
Target Sequence 
GCAGGCGCATCTGAGTCAGCATTTTATGCTCTAAAGAAGCAGCAGCATAAAAAGAGAAAACTGGTTGATCGTCGTGCTTC
GAAGAGCAGAAAGATAAGATACCATGTCCACGAGAAGATTGCAAATTTCATGGCCCCAGTACCCATGGTTATTCCTCCAA
TGGCTCCAAAATTGTTTGAGAATTTGTTTGGGATGGGAAACCAAAAGTCGACCACAGCGTGAATGCTTGACGATGATACT
GCAATGTTGACATTAGGACGTATAACCCTTTCTTGACTTATAAAGGCCAGTCGTGTCTCGTAAAGATTCTGATTTGATCA
AATTCGATGGTATCCGTGTTGGACTGGGGAACTGCATTTCGATTCATACTCATATTTGTTTAGCAATCTGGTTCTTAACT
GACGAGTAGTTATTAAGAGGGATCTCTATGAAAGAATTTGGAGGATAATTTAGATTATCAGNNNNNGNNGNNTNATTTAG
ATTATCAGTTGAGGTCGTTTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28207.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis