Browse Element(s) Details


Os.28216.3.S1_x_at

Description gb:AK058312.1
DB_XREF= gi:32968330
TID=Os.28216.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28216 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) chlorophyll ab binding protein (P0690B02.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-013-H12, full insert sequence.
FL= gb:AK058312.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g522408/11Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os07g375503/11Chlorophyll a-b binding protein of LHCII type III, chloroplast precursor, putative, expressed
LOC_Os03g396101/11Chlorophyll a-b binding protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g52170Os.27417.1.S1_at11/111+30335128..30338941Mrp protein homolog, putative, expressed
LOC_Os01g52180NANA1+30340881..30341987lipase class 3 family protein, putative, expressed
LOC_Os01g52190OsAffx.23760.1.S1_at11/111+30342781..30344121Eukaryotic aspartyl protease family protein
LOC_Os01g52200OsAffx.2310.1.S1_at11/111+30344628..30346826mitochondrial ATP synthase g subunit family protein, putative
LOC_Os01g52214Os.11071.1.A1_at10/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.11071.1.A1_s_at7/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214OsAffx.25300.1.S1_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52214Os.35752.3.S1_x_at2/111+30347801..30350656NADH-ubiquinone oxidoreductase 20 kDa subunit, mitochondrial precursor, putative, expressed
LOC_Os01g52230Os.12535.1.S1_at11/111+30352100..30353312Phosphatase, putative, expressed
LOC_Os01g52240Os.28216.1.S1_a_at11/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52240Os.28216.3.S1_x_at8/111+30357845..30359017Chlorophyll a-b binding protein 2, chloroplast precursor, putative, expressed
LOC_Os01g52250Os.17856.1.S1_a_at11/111+30359029..30368272glycogen/starch synthases, ADP-glucose type family protein, expressed
LOC_Os01g52260Os.11335.3.S1_x_at11/111+30369386..30370631serine O-acetyltransferase family protein, expressed
LOC_Os01g52270OsAffx.23761.2.S1_x_at11/111+30375076..30376746NB-ARC domain containing protein, expressed
LOC_Os01g52280OsAffx.21532.1.S1_at11/111+30382414..30383886NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009769biological_processphotosynthesis, light harvesting in photosystem II
GO:0015979biological_processphotosynthesis
GO:0030076cellular_componentlight-harvesting complex
GO:0042651cellular_componentthylakoid membrane
GO:0005198molecular_functionstructural molecule activity
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28216.3.S1_x_at--1042--8631Chr07:22486438..22486462 (25 bp)
TGGGATTCCAGGTCGTCCTCATGGG
LOC_Os07g37550
Os.28216.3.S1_x_at--887--1732Chr07:22486572..22486596 (25 bp)
ACCTTCGCCGAGCTCAAGGTCAAGG
LOC_Os07g37550
Os.28216.3.S1_x_at--811--2871Chr07:22486665..22486689 (25 bp)
AAGGGCCCCTTGGAGAACCTGCTCG
LOC_Os07g37550
Os.28216.3.S1_x_at--99--9311Chr01:30358712..30358736 (25 bp)
TCCCCGGCAAGTGAGTGTGGATCTC
LOC_Os01g52240
Os.28216.3.S1_x_at--871--8891Chr01:30358723..30358747 (25 bp)
TGAGTGTGGATCTCCGGCGAGCAAC
LOC_Os01g52240
Os.28216.3.S1_x_at--467--2571Chr01:30358745..30358769 (25 bp)
AACGGCGGTGAGGTCCATTGCTTTC
LOC_Os01g52240
Os.28216.3.S1_x_at--928--51Chr01:30358761..30358785 (25 bp)
ATTGCTTTCATGCAGGCTGCGGTGA
LOC_Os01g52240
Os.28216.3.S1_x_at--275--8911Chr01:30358783..30358807 (25 bp)
TGAGACGCGCGACGTTCTCCTCTTT
LOC_Os01g52240
Os.28216.3.S1_x_at--893--8751Chr01:30358803..30358827 (25 bp)
TCTTTCCGCGTACCCGAATATTTGC
LOC_Os01g52240
Os.28216.3.S1_x_at--290--5231Chr01:30358818..30358842 (25 bp)
GAATATTTGCTTCGTTCGTTCAGAT
LOC_Os01g52240
Os.28216.3.S1_x_at--230--4911Chr01:30358826..30358850 (25 bp)
GCTTCGTTCGTTCAGATTGTGTAAA
LOC_Os01g52240
Target Sequence 
TGGGATTCCAGGTCGTCCTCATGGGCCTCGTCGAGGGCTACCGCATCAACGGCCTCCCCGGCGTCGGCGACGGCAACGAC
CTCTACCCCGGCGGCCAGTACTTCGACCCGCTCGGCCTCGCCGACGACCCCGTCACCTTCGCCGAGCTCAAGGTCAAGGA
GATCAAGAATGGCCGCCTCGCCATGTTCTCCATGTTCGGCTTCTTCGTCCAGGCCATCGTCACCGGCAAGGGCCCCTTGG
AGAACCTGCTCGACCACCTCGCCGACCCCGTCAACAACAACGCATGGGCCTACGCCACCAACTTCGTCCCCGGCAAGTGA
GTGTGGATCTCCGGCGAGCAACGGCGGTGAGGTCCATTGCTTTCATGCAGGCTGCGGTGAGACGCGCGACGTTCTCCTCT
TTCCGCGTACCCGAATATTTGCTTCGTTCGTTCAGATTGTGTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28216.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis