Browse Element(s) Details


Os.28421.1.S1_at

Description gb:AK069946.1
DB_XREF= gi:32979970
TID=Os.28421.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28421 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023035A19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023035A19, full insert sequence.
FL= gb:AK069946.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3624011/11deoxyribodipyrimidine photolyase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36210NANA9+20880430..20881086Harpin-induced protein 1 containing protein
LOC_Os09g36220Os.8142.1.S1_a_at11/119+20884692..20889357Two-component response regulator-like PRR95, putative, expressed
LOC_Os09g36230OsAffx.18064.1.S1_at1/119+20894431..20896238hypothetical protein
LOC_Os09g36240Os.28421.1.S1_at11/119+20897102..20907998deoxyribodipyrimidine photolyase family protein, expressed
LOC_Os09g36240OsAffx.18064.1.S1_at6/119+20897102..20907998deoxyribodipyrimidine photolyase family protein, expressed
LOC_Os09g36250Os.21636.1.S2_a_at11/119+20914938..20919327ODORANT1 protein, putative, expressed
LOC_Os09g36250Os.21636.2.S1_a_at11/119+20914938..20919327ODORANT1 protein, putative, expressed
LOC_Os09g36260NANA9+20920528..20921690hypothetical protein
LOC_Os09g36270Os.23137.1.S1_at10/119+20928304..20937909Pantothenate kinase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0003913molecular_functionDNA photolyase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28421.1.S1_at--387--1571Chr09:20902269..20902399 (25 bp)
AGCTAGATGCAGGTCATGCTCCACA
LOC_Os09g36240
Os.28421.1.S1_at--1150--611Chr09:20902390..20902414 (25 bp)
ATGCTCCACATGATGAAGTTCCTGA
LOC_Os09g36240
Os.28421.1.S1_at--28--9011Chr09:20902415..20902439 (25 bp)
TGAAGTGAACTCCTTGCTGTGCGAA
LOC_Os09g36240
Os.28421.1.S1_at--1141--8451Chr09:20902454..20902478 (25 bp)
TGGCGCTTAGCCAGCAATGGAGTTC
LOC_Os09g36240
Os.28421.1.S1_at--917--831Chr09:20902470..20902494 (25 bp)
ATGGAGTTCCATCCTACTTAGATGT
LOC_Os09g36240
Os.28421.1.S1_at--85--6311Chr09:20902791..20902815 (25 bp)
GATGAGATGCAATTCGCACTCCTGA
LOC_Os09g36240
Os.28421.1.S1_at--459--9351Chr09:20902804..20902828 (25 bp)
TCGCACTCCTGATGAACTTTCTGGT
LOC_Os09g36240
Os.28421.1.S1_at--162--831Chr09:20902852..20902876 (25 bp)
ATGGACCTAGCTCAAAATCAACCTT
LOC_Os09g36240
Os.28421.1.S1_at--1043--3071Chr09:20902867..20902891 (25 bp)
AATCAACCTTGAACCCTACATTACA
LOC_Os09g36240
Os.28421.1.S1_at--454--10271Chr09:20902921..20902945 (25 bp)
TTTGACCCCATCGTGCAAGTAATGT
LOC_Os09g36240
Os.28421.1.S1_at--1158--9751Chr09:20902947..20902971 (25 bp)
TAATCGTGCCACATTTGTACTCTCT
LOC_Os09g36240
Target Sequence 
AGCTAGATGCAGGTCATGCTCCACATGATGAAGTTCCTGATGAAGTGAACTCCTTGCTGTGCGAATGGATCAAAGAGACT
GGCGCTTAGCCAGCAATGGAGTTCCATCCTACTTAGATGTGGCAAAAAGGAGATGAATATTGAACACTGTACAGAATTGA
AAAACAGCATCGAGCAGGTTTGATAGCAAGTCGGCACAAGAAGATGAGATGCAATTCGCACTCCTGATGAACTTTCTGGT
GGTTCTTAAAGCTGTTTTTGTTTATGGACCTAGCTCAAAATCAACCTTGAACCCTACATTACAAGAGTTGTCTAAATCTA
ATCATACAAACTTTTGACCCCATCGTGCAAGTAATGTCTAATCGTGCCACATTTGTACTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28421.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis