Browse Element(s) Details


OsAffx.18064.1.S1_at

Description tigr:9637.m03436
TID=OsAffx.18064.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to contains similarity to Arabidopsis membrane-associated salt-inducible-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g362406/11deoxyribodipyrimidine photolyase family protein, expressed
LOC_Os09g362301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g36210NANA9+20880430..20881086Harpin-induced protein 1 containing protein
LOC_Os09g36220Os.8142.1.S1_a_at11/119+20884692..20889357Two-component response regulator-like PRR95, putative, expressed
LOC_Os09g36230OsAffx.18064.1.S1_at1/119+20894431..20896238hypothetical protein
LOC_Os09g36240Os.28421.1.S1_at11/119+20897102..20907998deoxyribodipyrimidine photolyase family protein, expressed
LOC_Os09g36240OsAffx.18064.1.S1_at6/119+20897102..20907998deoxyribodipyrimidine photolyase family protein, expressed
LOC_Os09g36250Os.21636.1.S2_a_at11/119+20914938..20919327ODORANT1 protein, putative, expressed
LOC_Os09g36250Os.21636.2.S1_a_at11/119+20914938..20919327ODORANT1 protein, putative, expressed
LOC_Os09g36260NANA9+20920528..20921690hypothetical protein
LOC_Os09g36270Os.23137.1.S1_at10/119+20928304..20937909Pantothenate kinase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006281biological_processDNA repair
GO:0003913molecular_functionDNA photolyase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18064.1.S1_at--592--6452Chr09:20906148..20906402 (25 bp)
GATAATGTCGAGGTTAGGAGATATT
LOC_Os09g36240
OsAffx.18064.1.S1_at--352--6851Chr09:20906403..20906753 (25 bp)
GTTTGACTTCAACTAAGAAATGTGC
LOC_Os09g36240
OsAffx.18064.1.S1_at--703--771Chr09:20906748..20906772 (25 bp)
ATGTGCAGTAAAAACCGAAGTCGTG
LOC_Os09g36240
OsAffx.18064.1.S1_at--818--5311Chr09:20906764..20906788 (25 bp)
GAAGTCGTGGTTTTTTCGGCTGCCG
LOC_Os09g36240
OsAffx.18064.1.S1_at--702--9451Chr09:20906779..20906799 (21 bp)
TCGGCTGCCGAATCAAAGCGTTACT
LOC_Os09g36240
OsAffx.18064.1.S1_at--87--5251Chr09:20906788..20907190 (25 bp)
GAATCAAAGCGTTACTCAGACACGA
LOC_Os09g36240
OsAffx.18064.1.S1_at--164--1271Chr09:20907999..20908023 (25 bp)
AGATTTCTTGTGCTATTGATGCCTC
NONE
OsAffx.18064.1.S1_at--829--3611Chr09:20908005..20908029 (25 bp)
CTTGTGCTATTGATGCCTCTAAACG
NONE
OsAffx.18064.1.S1_at--846--51Chr09:20908013..20908037 (25 bp)
ATTGATGCCTCTAAACGCACACACA
NONE
OsAffx.18064.1.S1_at--931--8731Chr09:20908044..20908068 (25 bp)
TGTCAAACTTAAACGAAATCCTCTT
NONE
OsAffx.18064.1.S1_at--861--2271Chr09:20908059..20908083 (25 bp)
AAATCCTCTTTAGCTACACATACAA
NONE
Target Sequence 
GATAATGTCGAGGTTAGGAGATATTGTTTGACTTCAACTAAGAAATGTGCAGTAAAAACCGAAGTCGTGGTTTTTTCGGC
TGCCGAATCAAAGCGTTACTCAGACACGATGCTGGAACTGCTACTTTTTGCTTTGGAAGATCTTAAGATGGTTTTGAAGT
CTCAGGAGTCTGATCTTCTCATAGGCTTGGGAAATGCTGAAGATGTTGTTCTCAAGCTTGTAAATGAGGTACAAGCGGGC
CTCATTTTCACAGAAGAGGAAGTTGAGTACAGAGTGCGCAATGTTCTGGCCAGTGTTGAATCATCTCTCTCTAATGCATC
ATACCTATCGGGAAACCCTCCTGAGATAGTGGTTTGGAGTGCCTCATTGTATGACTACAAGATTTCTTGTGCTATTGATG
CCTCTAAACGCACACACAACACAGTGTCAAACTTAAACGAAATCCTCTTTAGCTACACATACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18064.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis