Browse Element(s) Details


Os.2858.1.S1_at

Description gb:AK071046.1
DB_XREF= gi:32981069
TID=Os.2858.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.2858 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023079K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079K17, full insert sequence.
FL= gb:AK071046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4806011/11glutamine amidotransferase class-I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g48040Os.50976.1.S1_at10/113+27259030..27262075ferredoxin family protein, expressed
LOC_Os03g48050Os.22656.1.A1_at11/113+27263450..27265346RNA methyltransferase, TrmH family protein, expressed
LOC_Os03g48060Os.2858.1.S1_at11/113+27283376..27287077glutamine amidotransferase class-I family protein, expressed
LOC_Os03g48070OsAffx.25617.1.S1_at11/113+27289000..27289427hypothetical protein
LOC_Os03g48080Os.2854.1.S1_at10/113+27292460..27295884CHCH domain containing protein, expressed
LOC_Os03g48090Os.2852.1.S1_at10/113+27296422..27300389Vegetatible incompatibility protein HET-E-1, putative, expressed
LOC_Os03g48100Os.52277.1.S1_x_at11/113+27300802..27307338expressed protein
LOC_Os03g48100Os.52277.1.S1_at9/113+27300802..27307338expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2858.1.S1_at--150--5671Chr03:27286297..27286321 (25 bp)
GACATCGGCGTGAACTGCATCCACC
LOC_Os03g48060
Os.2858.1.S1_at--931--8471Chr03:27286334..27286358 (25 bp)
TGGCGAGGCTCTTTTCGCCGATCAA
LOC_Os03g48060
Os.2858.1.S1_at--174--9171Chr03:27286373..27286397 (25 bp)
TGCCCATCATCGAGTTCCACCAAGA
LOC_Os03g48060
Os.2858.1.S1_at--6--1491Chr03:27286607..27286631 (25 bp)
AGCAAGGACATCCTCATGAGCATCG
LOC_Os03g48060
Os.2858.1.S1_at--1094--4031Chr03:27286651..27286765 (25 bp)
CGATCTCATCCTGGATCACCAGGTG
LOC_Os03g48060
Os.2858.1.S1_at--843--371Chr03:27286755..27286779 (25 bp)
ATCACCAGGTGGATAAGGCGAAGGC
LOC_Os03g48060
Os.2858.1.S1_at--541--2951Chr03:27286775..27286799 (25 bp)
AAGGCGAGCTTCGACTTGCGGCAAC
LOC_Os03g48060
Os.2858.1.S1_at--146--5931Chr03:27286780..27286804 (25 bp)
GAGCTTCGACTTGCGGCAACCAGAC
LOC_Os03g48060
Os.2858.1.S1_at--1108--7631Chr03:27286960..27286984 (25 bp)
GGGAGCCTAGATTAATCCTTATTTT
LOC_Os03g48060
Os.2858.1.S1_at--1080--6551Chr03:27286969..27286993 (25 bp)
GATTAATCCTTATTTTCTGCTTCAG
LOC_Os03g48060
Os.2858.1.S1_at--441--10211Chr03:27286979..27287003 (25 bp)
TATTTTCTGCTTCAGATTTGTACAG
LOC_Os03g48060
Target Sequence 
GACATCGGCGTGAACTGCATCCACCCCACCGCGGCCATGGCGAGGCTCTTTTCGCCGATCAAGCTCCCCGTCCACATGCC
CATCATCGAGTTCCACCAAGATGAGGTGTGGGAGCTGCCTCCTCAGGCCGAGGTGCTGGCGCGGTCGGACATGACCGGCG
TCGAGATGTTCCGTCTCGGNGACCGCGCCATGGGCGTCCAGGGCCACCCGGAGTACAGCAAGGACATCCTCATGAGCATC
GCCGACCGTCTCCTCCGGAACGATCTCATCCTGGATCACCAGGTGGATAAGGCGAAGGCGAGCTTCGACTTGCGGCAACC
AGACAAGGATNTGTGGAAGAAGGTGTGCAGGGGTTTTCTGAAGGGGAGGCTTCAGTCATCGCAGCAGCCGCAGCAGCAGC
AACATCAGAAGCAGCAGAAGGCGGCGCAGCTGGTGCTATAGTAAACAAGATTAGTGAGTGAGATCAGATGGGGGCATTGG
GGAGCCTAGATTAATCCTTATTTTCTGCTTCAGATTTGTACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis