Browse Element(s) Details


Os.28605.1.S1_at

Description gb:AK111308.1
DB_XREF= gi:32996517
TID=Os.28605.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28605 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1070A12.16 (B1070A12.16), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-181-B12, full insert sequence.
FL= gb:AK111308.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5762011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g57590OsAffx.23826.1.S1_at11/111+33627675..33629510hypothetical protein
LOC_Os01g57599Os.11595.1.S2_at11/111+33629527..33631391retrotransposon protein, putative, LINE subclass, expressed
LOC_Os01g57599Os.11595.1.S1_at11/111+33629527..33631391retrotransposon protein, putative, LINE subclass, expressed
LOC_Os01g57610Os.36449.1.S1_at11/111+33635296..33637781Indole-3-acetic acid-amido synthetase GH3.6, putative, expressed
LOC_Os01g57620Os.28605.1.S1_at11/111+33643891..33644760expressed protein
LOC_Os01g57630Os.22276.1.S1_a_at11/111+33644887..33649756pentatricopeptide, putative, expressed
LOC_Os01g57650Os.37921.2.S1_at11/111+33656401..33658783zinc finger family protein, putative, expressed
LOC_Os01g57660OsAffx.23827.1.S1_x_at11/111+33668491..33668869hypothetical protein
LOC_Os01g57660OsAffx.23827.1.S1_at11/111+33668491..33668869hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28605.1.S1_at--91--1771Chr01:33644327..33644351 (25 bp)
ACCGGCGTTGATCTTGTTGACTTCC
LOC_Os01g57620
Os.28605.1.S1_at--603--9091Chr01:33644239..33644263 (25 bp)
TGCTCTCCGACGAACCGATGGCGCT
LOC_Os01g57620
Os.28605.1.S1_at--1009--4111Chr01:33644151..33644175 (25 bp)
CGCAATTGCTCTCGCCATCGAACGG
LOC_Os01g57620
Os.28605.1.S1_at--694--9351Chr01:33644134..33644158 (25 bp)
TCGAACGGCATATCGATCTCTCTAC
LOC_Os01g57620
Os.28605.1.S1_at--312--3751Chr01:33644099..33644123 (25 bp)
CTCTTCAAAAAGTCACGCGTGGCGG
LOC_Os01g57620
Os.28605.1.S1_at--246--8491Chr01:33644080..33644104 (25 bp)
TGGCGGCGGCTTGGAATGCTACCTT
LOC_Os01g57620
Os.28605.1.S1_at--540--3011Chr01:33644066..33644090 (25 bp)
AATGCTACCTTGGATGGCTCAGCGG
LOC_Os01g57620
Os.28605.1.S1_at--22--4951Chr01:33643998..33644022 (25 bp)
GCATTGATCCGCAATCGTTTACTCT
LOC_Os01g57620
Os.28605.1.S1_at--1064--3011Chr01:33643986..33644010 (25 bp)
AATCGTTTACTCTTGTTTACATTGC
LOC_Os01g57620
Os.28605.1.S1_at--29--1011Chr01:33643912..33643936 (25 bp)
AGGATAACTTACGTGAAATTGCCAA
LOC_Os01g57620
Os.28605.1.S1_at--97--3171Chr01:33643896..33643920 (25 bp)
AATTGCCAAGTGAACTACTAGTTGT
LOC_Os01g57620
Target Sequence 
ACCGGCGTTGATCTTGTTGACTTCCCTCCCCTGGTAAGGCGCGCGGACCCGCACAATCTCCCGTTCTTCGACGGCGTGTT
CGACGTCGTGCTCTCCGACGAACCGATGGCGCTCACCGGCGCGCTCTTCCCGTCCCGGTTCGTGGCCGAGGCCGAGCGCA
CCGTCCGGTGGGGCGGCGCAATTGCTCTCGCCATCGAACGGCATATCGATCTCTCTACCGTCGCCTCCCTCTTCAAAAAG
TCACGCGTGGCGGCGGCTTGGAATGCTACCTTGGATGGCTCAGCGGCGACCATGNNANTCNNNNNAAAAAATAGCAACAA
TACAAAACAGCATTGATCCGCAATCGTTTACTCTTGTTTACATTGCAAGTTAATGTGGTATTGTATGGTCTTTATAGATT
TGTTCGAAATTGGACAGGATAACTTACGTGAAATTGCCAAGTGAACTACTAGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28605.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis