Browse Element(s) Details


Os.28778.1.S1_at

Description gb:AK111090.1
DB_XREF= gi:32996299
TID=Os.28778.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28778 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0439E11.22 (P0439E11.22), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-G01, full insert sequence.
FL= gb:AK111090.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6111011/11Ulp1 protease family, C-terminal catalytic domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g61080Os.31521.1.S1_at11/111+35674831..35677395DNA-binding protein, putative, expressed
LOC_Os01g61080OsAffx.13395.1.S1_x_at1/111+35674831..35677395DNA-binding protein, putative, expressed
LOC_Os01g61090OsAffx.22940.5.S1_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.1.S1_s_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.2.S1_s_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090Os.35344.3.S1_x_at11/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.5.S1_x_at10/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090Os.35344.18.S1_x_at9/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.2.S1_at8/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.22940.3.S1_x_at7/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61090OsAffx.31552.2.S1_at1/111+35679640..35687193transposon protein, putative, Mutator sub-class
LOC_Os01g61100OsAffx.23878.1.S1_at11/111+35689280..35695661transposon protein, putative, unclassified
LOC_Os01g61110OsAffx.23879.1.S1_at11/111+35696002..35706382Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g61110Os.28778.1.S1_at11/111+35696002..35706382Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os01g61120Os.26965.1.S1_at11/111+35713613..35718462expressed protein
LOC_Os01g61130NANA1+35719409..35720698retrotransposon protein, putative, LINE subclass
LOC_Os01g61140OsAffx.21477.2.S1_at1/111+35721084..35722483retrotransposon protein, putative, unclassified
LOC_Os01g61150Os.33817.1.S1_at11/111+35723015..35727097PX domain containing protein, expressed
LOC_Os01g61160Os.34310.1.S1_at11/111+35729644..35732156laccase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28778.1.S1_at--92--1551Chr01:35705869..35705893 (25 bp)
AGCATAGTGGAGGAGCAATCGGATT
LOC_Os01g61110
Os.28778.1.S1_at--1035--2771Chr01:35705828..35705852 (25 bp)
AAGAGCAATCTTCTTTTTCCACTCA
LOC_Os01g61110
Os.28778.1.S1_at--829--5191Chr01:35705824..35705848 (25 bp)
GCAATCTTCTTTTTCCACTCATATA
LOC_Os01g61110
Os.28778.1.S1_at--779--9551Chr01:35705785..35705809 (25 bp)
TCTTTCTGATCTTCCGATGTGAATA
LOC_Os01g61110
Os.28778.1.S1_at--323--6411Chr01:35705778..35705802 (25 bp)
GATCTTCCGATGTGAATACCACGAG
LOC_Os01g61110
Os.28778.1.S1_at--1002--5951Chr01:35705752..35705776 (25 bp)
GAGAAGGCATTTCCGGTTCTCTCAC
LOC_Os01g61110
Os.28778.1.S1_at--417--1731Chr01:35705729..35705753 (25 bp)
ACCTTCAATCCGTCGACGCATGTAT
LOC_Os01g61110
Os.28778.1.S1_at--314--331Chr01:35705710..35705734 (25 bp)
ATGTATAAACATGTCCGGGTTTGAG
LOC_Os01g61110
Os.28778.1.S1_at--964--10731Chr01:35705690..35705714 (25 bp)
TTGAGCGGTTTTTAGCTCGGGAGAT
LOC_Os01g61110
Os.28778.1.S1_at--213--2351Chr01:35705644..35705668 (25 bp)
TAAATGTAAAAAGAGCCCCAACCTG
LOC_Os01g61110
Os.28778.1.S1_at--1090--7911Chr01:35705606..35705630 (25 bp)
GGTTGGGTTCATTCAAGCTTTCTAA
LOC_Os01g61110
Target Sequence 
AGCATAGTGGAGGAGCAATCGGATTAATTAAGGAGAGCTCGAAGAGCAATCTTCTTTTTCCACTCATATATATTCTTTTG
GTTTTCTTTCTGATCTTCCGATGTGAATACCACGAGAGAGAAGGCATTTCCGGTTCTCTCACCTTCAATCCGTCGACGCA
TGTATAAACATGTCCGGGTTTGAGCGGTTTTTAGCTCGGGAGATGAGGGGAAAACGGTGACGGAATAAATGTAAAAAGAG
CCCCAACCTGTACAAAGAGATTTGGTTGGGTTCATTCAAGCTTTCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28778.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis