Browse Element(s) Details


Os.2884.1.S1_at

Description gb:AK069361.1
DB_XREF= gi:32979385
TID=Os.2884.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.2884 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative trehalose-6-phosphate phosphatase (OSJNBa0015J15.3), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014P21, full insert sequence.
FL= gb:AK069361.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4055010/11trehalose-6-phosphate phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40510Os.6838.1.S1_at11/1110+21360623..21361403Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40520Os.22427.1.S1_at11/1110+21364191..21364817Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40530Os.36913.1.S1_at11/1110+21367364..21368093Cortical cell delineating protein precursor, putative, expressed
LOC_Os10g40540Os.2885.1.S1_at11/1110+21371036..21375114Enoyl-CoA hydratase, putative, expressed
LOC_Os10g40550Os.2884.1.S1_at10/1110+21377297..21381288trehalose-6-phosphate phosphatase, putative, expressed
LOC_Os10g40559OsAffx.30736.1.S1_x_at11/1110+21392120..21393511Exostosin family protein, expressed
LOC_Os10g40570Os.46628.1.S1_x_at11/1110+21394748..21397494flavin-containing monooxygenase family protein, putative, expressed
LOC_Os10g40570Os.3053.1.A1_at10/1110+21394748..21397494flavin-containing monooxygenase family protein, putative, expressed
LOC_Os10g40580Os.3051.1.S1_at11/1110+21401470..21407128expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0004805molecular_functiontrehalose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2884.1.S1_at--181--2491Chr10:21377907..21377931 (25 bp)
AACAGCATTGGCTTTGGAATTTTGG
LOC_Os10g40550
Os.2884.1.S1_at--800--8211Chr10:21377892..21377916 (25 bp)
GGAATTTTGGTGTCATCTGTGCCCA
LOC_Os10g40550
Os.2884.1.S1_at--509--9471Chr10:21377877..21377901 (25 bp)
TCTGTGCCCAAGGATACTGATGCTT
LOC_Os10g40550
Os.2884.1.S1_at--1072--8851Chr10:21377860..21377884 (25 bp)
TGATGCTTTCTATTCCGTACGGGAC
LOC_Os10g40550
Os.2884.1.S1_at--637--7671Chr10:21377479..21377503 (25 bp)
GGGATTCTGAGACATTTCATTCTTT
LOC_Os10g40550
Os.2884.1.S1_at--973--8951Chr10:21377406..21377430 (25 bp)
TGAAAAATTTTGGTTCCTGTCCCTG
LOC_Os10g40550
Os.2884.1.S1_at--617--8691Chr10:21377389..21377413 (25 bp)
TGTCCCTGTCGTCTTAGGCAATTAT
LOC_Os10g40550
Os.2884.1.S1_at--101--8231Chr10:21377373..21377397 (25 bp)
GGCAATTATTTATTCTACCGGCAAG
LOC_Os10g40550
Os.2884.1.S1_at--46--6751Chr10:21377332..21377356 (25 bp)
GTTCATTTGTTCTTTAGTGTGCTGC
LOC_Os10g40550
Os.2884.1.S1_at--524--7311Chr10:21377314..21377338 (25 bp)
GTGCTGCAACGTTTTGTAGCTGTTA
LOC_Os10g40550
Os.2884.1.S1_at--66--6791Chr10:21377293..21377317 (25 bp)
GTTATTCCAGTGTGCCCTTCTAAAA
NONE
Target Sequence 
AACAGCATTGGCTTTGGAATTTTGGTGTCATCTGTGCCCAAGGATACTGATGCTTTCTATTCCGTACGGGACCCAGCTGA
GGTGATGGAATTCCTGAAGAAACTGGCATCTTGGAAGGAGGAATCCACTTAAGCAGAAGGGAGGAACATAACAGAATCGT
TTTTTGAGGATATGGAGAAGTACCAACTATAAATACGAGCAAAATATACACTGCTAACAAATAAGTCTGGCCAAAATGTT
TTTGATTTGGCATCCTATTATATAAGAGGCTCCCTAAACCACCCTTTTTTGGTCTCACTTTCATCTTATGTTTCTGGGAT
TCTGAGACATTTCATTCTTTTATTAGTTCTGTTCCTTTAGTATATATAAAATATATACACATGTATGNTGAAAAATTTTG
GTTCCTGTCCCTGTCGTCTTAGGCAATTATTTATTCTACCGGCAAGTTGTAAACAACTGGTTGTTCATTTGTTCTTTAGT
GTGCTGCAACGTTTTGTAGCTGTTATTCCAGTGTGCCCTTCTAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2884.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis