Browse Element(s) Details


Os.29062.1.S1_at

Description gb:AK110697.1
DB_XREF= gi:32995906
TID=Os.29062.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.29062 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0024G09.24 (P0024G09.24), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-170-A12, full insert sequence.
FL= gb:AK110697.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0515011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05100OsAffx.25610.1.S1_s_at11/111+2385407..2387285expressed protein
LOC_Os01g05100Os.53463.1.S1_at9/111+2385407..2387285expressed protein
LOC_Os01g05120OsAffx.23118.1.S1_at10/111+2397747..2399686Ubiquitin fusion degradation protein UFD1 containing protein
LOC_Os01g05130Os.17736.1.S1_at11/111+2400072..2402749scarecrow-like transcription factor 11, putative, expressed
LOC_Os01g05140Os.36597.1.S1_at10/111+2403277..2404853expressed protein
LOC_Os01g05140Os.36597.1.S1_x_at10/111+2403277..2404853expressed protein
LOC_Os01g05140OsAffx.10913.1.S1_at10/111+2403277..2404853expressed protein
LOC_Os01g05150Os.29062.1.S1_at11/111+2411073..2411874expressed protein
LOC_Os01g05160OsAffx.23120.1.S1_at10/111+2416461..2416964hypothetical protein
LOC_Os01g05170OsAffx.22785.1.S1_at11/111+2419044..2419704expressed protein
LOC_Os01g05170OsAffx.22785.1.S1_s_at11/111+2419044..2419704expressed protein
LOC_Os01g05170OsAffx.22785.1.S1_x_at11/111+2419044..2419704expressed protein
LOC_Os01g05180OsAffx.23123.1.S1_at11/111+2431644..2432723hypothetical protein
LOC_Os01g05190OsAffx.23121.1.S1_at11/111+2435289..2435925expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.29062.1.S1_at--841--8391Chr01:2411477..2411501 (25 bp)
GGCGCTGCTCTGGTAAGTATGGTTC
LOC_Os01g05150
Os.29062.1.S1_at--894--2231Chr01:2411557..2411581 (25 bp)
ACAATAATAATTGCCGGCGTCTCTC
LOC_Os01g05150
Os.29062.1.S1_at--162--9551Chr01:2411582..2411606 (25 bp)
TCTAGCTTGCTGGTCGATCGTGTTT
LOC_Os01g05150
Os.29062.1.S1_at--425--251Chr01:2411623..2411647 (25 bp)
ATATCATATTCTTCTTCCATTTGGT
LOC_Os01g05150
Os.29062.1.S1_at--922--211Chr01:2411641..2411665 (25 bp)
ATTTGGTTTGCTCGTTTGCTGCGTC
LOC_Os01g05150
Os.29062.1.S1_at--489--7491Chr01:2411666..2411690 (25 bp)
GTGGTTGTGTCTTGTCGTCGTAGCA
LOC_Os01g05150
Os.29062.1.S1_at--474--6111Chr01:2411716..2411740 (25 bp)
GAGTCCACTGTTCTGTTCTTATTTA
LOC_Os01g05150
Os.29062.1.S1_at--468--10411Chr01:2411734..2411758 (25 bp)
TTATTTACTCTGTCTCGTGTGCTTC
LOC_Os01g05150
Os.29062.1.S1_at--447--7331Chr01:2411752..2411776 (25 bp)
GTGCTTCGATTGATGACCGGCTTAA
LOC_Os01g05150
Os.29062.1.S1_at--654--1771Chr01:2411767..2411791 (25 bp)
ACCGGCTTAATCGACCAGTGTTCTA
LOC_Os01g05150
Os.29062.1.S1_at--629--8031Chr01:2411793..2411817 (25 bp)
GGAGTGTTCATCATATCTCTCGATT
LOC_Os01g05150
Target Sequence 
GGCGCTGCTCTGGTAAGTATGGTTCTCGAACAGGCTCCGGTCCGGCCGCACCGCTGNCCGCATATCCATGATCGGAGCAA
ACAATAATAATTGCCGGCGTCTCTCTCTAGCTTGCTGGTCGATCGTGTTTGTGTGATTGAAAATGAATATCATATTCTTC
TTCCATTTGGTTTGCTCGTTTGCTGCGTCGTGGTTGTGTCTTGTCGTCGTAGCATGTTCTGTTGTTGCAAGTAGTTAGAG
AGTCCACTGTTCTGTTCTTATTTACTCTGTCTCGTGTGCTTCGATTGATGACCGGCTTAATCGACCAGTGTTCTATGGAG
TGTTCATCATATCTCTCGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.29062.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis