Browse Element(s) Details


OsAffx.23121.1.S1_at

Description tigr:9629.m00442
TID=OsAffx.23121.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0519011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05150Os.29062.1.S1_at11/111+2411073..2411874expressed protein
LOC_Os01g05160OsAffx.23120.1.S1_at10/111+2416461..2416964hypothetical protein
LOC_Os01g05170OsAffx.22785.1.S1_at11/111+2419044..2419704expressed protein
LOC_Os01g05170OsAffx.22785.1.S1_s_at11/111+2419044..2419704expressed protein
LOC_Os01g05170OsAffx.22785.1.S1_x_at11/111+2419044..2419704expressed protein
LOC_Os01g05180OsAffx.23123.1.S1_at11/111+2431644..2432723hypothetical protein
LOC_Os01g05190OsAffx.23121.1.S1_at11/111+2435289..2435925expressed protein
LOC_Os01g05200OsAffx.30226.2.S1_x_at1/111+2438048..2441714retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05200Os.46785.2.S1_x_at1/111+2438048..2441714retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05200OsAffx.442.1.S1_x_at1/111+2438048..2441714retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g05210OsAffx.22785.1.S1_s_at11/111+2445518..2445850hypothetical protein
LOC_Os01g05210OsAffx.22785.1.S1_x_at3/111+2445518..2445850hypothetical protein
LOC_Os01g05220OsAffx.23123.1.S1_at11/111+2449393..2450388hypothetical protein
LOC_Os01g05220OsAffx.23018.1.S1_at1/111+2449393..2450388hypothetical protein
LOC_Os01g05230NANA1+2454786..2455254hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23121.1.S1_at--55--6171Chr01:2435561..2435581 (21 bp)
GAGGAGCTACCACGCAACGCAACTG
LOC_Os01g05190
OsAffx.23121.1.S1_at--861--4352Chr01:2435552..2435576 (25 bp)
CCACGCAACGCAACTGCTGGTTTTT
LOC_Os01g05190
OsAffx.23121.1.S1_at--661--3251Chr01:2435542..2435566 (25 bp)
CAACTGCTGGTTTTTTAGGGATTAT
LOC_Os01g05190
OsAffx.23121.1.S1_at--110--6271Chr01:2435501..2435525 (25 bp)
GATGTGGATACTAACAAAGTCAGCA
LOC_Os01g05190
OsAffx.23121.1.S1_at--465--7111Chr01:2435483..2435507 (25 bp)
GTCAGCATAACTCAATTAAGCAGGA
LOC_Os01g05190
OsAffx.23121.1.S1_at--1010--2451Chr01:2435406..2435430 (25 bp)
AACAACCACAAGCTATGCCGACCAG
LOC_Os01g05190
OsAffx.23121.1.S1_at--233--2651Chr01:2435403..2435427 (25 bp)
AACCACAAGCTATGCCGACCAGATC
LOC_Os01g05190
OsAffx.23121.1.S1_at--942--5711Chr01:2435369..2435393 (25 bp)
GACGGCCGGCGCACTAATGTTATAA
LOC_Os01g05190
OsAffx.23121.1.S1_at--605--8391Chr01:2435362..2435386 (25 bp)
GGCGCACTAATGTTATAACCATGTT
LOC_Os01g05190
OsAffx.23121.1.S1_at--208--1711Chr01:2435345..2435369 (25 bp)
ACCATGTTAAACTCTCAAGGAACTA
LOC_Os01g05190
OsAffx.23121.1.S1_at--839--8152Chr01:2453230..2453254 (25 bp)
GGAACTACAAAAGCCTTACAAGAGA
NONE
Target Sequence 
GAGGAGCTACCACGCAACGCAACTGCTGGTTTTTTAGGGATTATGGGAATAGTATCTGAAGATGTGGATACTAACAAAGT
CAGCATAACTCAATTAAGCAGGAACTCAAAGCACATCAACGACACTGTCTTTCAAACCCCAAACCCCAAGTGCCCAACAA
CCACAAGCTATGCCGACCAGATCCTGGCCGAGGACGGCCGGCGCACTAATGTTATAACCATGTTAAACTCTCAAGGAACT
ACAAAAGCCTTACAAGAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23121.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis