Browse Element(s) Details


Os.30193.1.S1_at

Description gb:AY339379.1
DB_XREF= gi:33440025
TID=Os.30193.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30193 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) Ap26 mRNA, complete cds.
PROD=Ap26
FL= gb:AK109141.1 gb:AY339379.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4625011/11AP2 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46240OsAffx.4105.1.S1_at11/114+27179211..27180167AP2 domain containing protein, expressed
LOC_Os04g46250Os.30193.1.S1_at11/114+27189894..27191292AP2 domain containing protein, expressed
LOC_Os04g46260NANA4+27197086..27197448hypothetical protein
LOC_Os04g46270OsAffx.26483.1.S1_x_at11/114+27201122..27203297hypothetical protein
LOC_Os04g46270OsAffx.22651.1.S1_x_at3/114+27201122..27203297hypothetical protein
LOC_Os04g46270Os.49487.1.S1_at1/114+27201122..27203297hypothetical protein
LOC_Os04g46280Os.14384.1.S1_at11/114+27204350..27207121Nudix hydrolase 8, putative, expressed
LOC_Os04g46290Os.9806.1.S1_at11/114+27207659..27210781UPF0326 protein hag1, putative, expressed
LOC_Os04g46300Os.52210.1.S1_at11/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46300OsAffx.32256.1.S1_x_at1/114+27211750..27215414NB-ARC domain containing protein
LOC_Os04g46300Os.47372.1.S1_x_at1/114+27211750..27215414NB-ARC domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009873biological_processethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30193.1.S1_at--222--4471Chr04:27190687..27190711 (25 bp)
GCCTCGACGACGAACAAGCGGAAGC
LOC_Os04g46250
Os.30193.1.S1_at--1160--6111Chr04:27190754..27190778 (25 bp)
GAGTGGTAAGCAAGGCCGTCAAGAC
LOC_Os04g46250
Os.30193.1.S1_at--740--8711Chr04:27190808..27190832 (25 bp)
TGTCGTCGTCCCTGACGTCGCGGGA
LOC_Os04g46250
Os.30193.1.S1_at--111--9931Chr04:27190927..27190951 (25 bp)
TACTGGGAAGCGCTGCTCGGTGGCC
LOC_Os04g46250
Os.30193.1.S1_at--1126--9651Chr04:27190998..27191022 (25 bp)
TCAGCTCACCGTTAACTGAGAAAAT
LOC_Os04g46250
Os.30193.1.S1_at--995--2451Chr04:27191025..27191049 (25 bp)
AACAATGATTAGCTGACGTGGGCAC
LOC_Os04g46250
Os.30193.1.S1_at--713--1911Chr04:27191040..27191064 (25 bp)
ACGTGGGCACAGAAATAATGCGTTT
LOC_Os04g46250
Os.30193.1.S1_at--868--10371Chr04:27191065..27191089 (25 bp)
TTTTCCCGTTGTTAACGACGTCATG
LOC_Os04g46250
Os.30193.1.S1_at--130--4091Chr04:27191080..27191104 (25 bp)
CGACGTCATGTGTACATTGGAACTT
LOC_Os04g46250
Os.30193.1.S1_at--871--7571Chr04:27191126..27191150 (25 bp)
GGGCGTATAGACAAACATCAGAAAG
LOC_Os04g46250
Os.30193.1.S1_at--252--3551Chr04:27191141..27191165 (25 bp)
CATCAGAAAGTGGTAGTCGTGTTTA
LOC_Os04g46250
Target Sequence 
GCCTCGACGACGAACAAGCGGAAGCGGCAGCCGTCGGAGGACCCCGACGACGGCGTCGAGGTGATCGGAGTGGTAAGCAA
GGCCGTCAAGACCGAGGCGCCGACGTCCAACTCGTCGTCACTGTCGTCGTCCCTGACGTCGCGGGACACGACGCCGGCCA
CGTCGTCGGCGGGGGCGGAGCACGCCGGCGCGGCCGCCGAGAGTTCGCCGGCGACGCCGTCGAGCTGGAGCTGGGAGCAG
TACTGGGAAGCGCTGCTCGGTGGCCTCCCGCCACTGTCGCCTCTGTCGCCGCACCCGGCGTTGGGGTTCCCTCAGCTCAC
CGTTAACTGAGAAAATTAAACAATGATTAGCTGACGTGGGCACAGAAATAATGCGTTTTTTTCCCGTTGTTAACGACGTC
ATGTGTACATTGGAACTTTTTTTGGGAGCTTAACAGAAGGGGCGTATAGACAAACATCAGAAAGTGGTAGTCGTGTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30193.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis