Browse Element(s) Details


Os.3049.1.S1_at

Description gb:AK071048.1
DB_XREF= gi:32981071
TID=Os.3049.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3049 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative oxysterol-binding protein (OSJNBb0014I11.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075N18, full insert sequence.
FL= gb:AK071048.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4059011/11Oxysterol-binding protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40570Os.46628.1.S1_x_at11/1110+21394748..21397494flavin-containing monooxygenase family protein, putative, expressed
LOC_Os10g40570Os.3053.1.A1_at10/1110+21394748..21397494flavin-containing monooxygenase family protein, putative, expressed
LOC_Os10g40580Os.3051.1.S1_at11/1110+21401470..21407128expressed protein
LOC_Os10g40584NANA10+21412305..21413135expressed protein
LOC_Os10g40590Os.3049.1.S1_at11/1110+21419780..21425169Oxysterol-binding protein, expressed
LOC_Os10g40600Os.3048.1.S1_at11/1110+21428091..21432515Nitrate/chlorate transporter, putative, expressed
LOC_Os10g40600Os.3048.2.S1_x_at11/1110+21428091..21432515Nitrate/chlorate transporter, putative, expressed
LOC_Os10g40610OsAffx.30737.1.S1_at11/1110+21444523..21446845Flavin-binding monooxygenase-like family protein, expressed
LOC_Os10g40612NANA10+21447813..21448892retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0008202biological_processsteroid metabolism
GO:0008142molecular_functionoxysterol binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3049.1.S1_at--309--3091Chr10:21424724..21424748 (25 bp)
AATAATGTGTCCACTCTTTGCACCA
LOC_Os10g40590
Os.3049.1.S1_at--306--6931Chr10:21424778..21424802 (25 bp)
GTAGTCGTTGACACCCCATTAATTA
LOC_Os10g40590
Os.3049.1.S1_at--49--291Chr10:21424816..21424840 (25 bp)
ATAGTTGATCGGCTGCTCCCGTTGC
LOC_Os10g40590
Os.3049.1.S1_at--1074--2771Chr10:21424853..21424877 (25 bp)
AAGAGCTAACATGCTCTCCTCTTGT
LOC_Os10g40590
Os.3049.1.S1_at--1080--7931Chr10:21424913..21424937 (25 bp)
GGATACTTAACTGTGAGGCCTGCTA
LOC_Os10g40590
Os.3049.1.S1_at--921--6211Chr10:21424927..21424951 (25 bp)
GAGGCCTGCTAGCTAACAATGTTGT
LOC_Os10g40590
Os.3049.1.S1_at--314--10511Chr10:21424977..21425001 (25 bp)
TTCAATCTTTGTACTGTTCCACAGA
LOC_Os10g40590
Os.3049.1.S1_at--1128--7051Chr10:21425044..21425068 (25 bp)
GTAAGCTTCTATGCTCATGGTCATG
LOC_Os10g40590
Os.3049.1.S1_at--872--7951Chr10:21425068..21425092 (25 bp)
GGATAATGGACGTTCATCTTTCTTT
LOC_Os10g40590
Os.3049.1.S1_at--129--10331Chr10:21425086..21425110 (25 bp)
TTTCTTTTTTGACCTCTGTGCCAAG
LOC_Os10g40590
Os.3049.1.S1_at--84--8391Chr10:21425114..21425138 (25 bp)
GGCGAGTAATCTTGTCCTGTATAGA
LOC_Os10g40590
Target Sequence 
AATAATGTGTCCACTCTTTGCACCAGCGCAAGTATATAGAGAAACTTCTGTTTAGTAGTCGTTGACACCCCATTAATTAT
TGAAGACGGTACATAGTTGATCGGCTGCTCCCGTTGCTACCATGCAAACAAGAGCTAACATGCTCTCCTCTTGTCATATA
GAAACACTGGGACATTTATGTGGATACTGGGATACTTAACTGTGAGGCCTGCTAGCTAACAATGTTGTTATTACTCTCAG
TGATATCCATTTTTTCAATCTTTGTACTGTTCCACAGAGATACTGAGTTATATACTTGGTTCCTAATTGTAATTGATCAT
GTAAGCTTCTATGCTCATGGTCATGGATAATGGACGTTCATCTTTCTTTTTTGACCTCTGTGCCAAGCCAGGCGAGTAAT
CTTGTCCTGTATAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3049.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis