Browse Element(s) Details


Os.3048.2.S1_x_at

Description gb:AK068409.1
DB_XREF= gi:32978427
TID=Os.3048.2
CNT=9
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3048 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative nitrate transporter (OSJNBb0014I11.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013147D24, full insert sequence.
FL= gb:AK068409.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4060011/11Nitrate/chlorate transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40580Os.3051.1.S1_at11/1110+21401470..21407128expressed protein
LOC_Os10g40584NANA10+21412305..21413135expressed protein
LOC_Os10g40590Os.3049.1.S1_at11/1110+21419780..21425169Oxysterol-binding protein, expressed
LOC_Os10g40600Os.3048.1.S1_at11/1110+21428091..21432515Nitrate/chlorate transporter, putative, expressed
LOC_Os10g40600Os.3048.2.S1_x_at11/1110+21428091..21432515Nitrate/chlorate transporter, putative, expressed
LOC_Os10g40610OsAffx.30737.1.S1_at11/1110+21444523..21446845Flavin-binding monooxygenase-like family protein, expressed
LOC_Os10g40612NANA10+21447813..21448892retrotransposon protein, putative, unclassified
LOC_Os10g40614Os.7567.1.S1_at11/1110+21456448..21457347Protease inhibitor/seed storage/LTP family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015706biological_processnitrate transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015112molecular_functionnitrate transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3048.2.S1_x_at--1135--531Chr10:21428587..21428611 (25 bp)
ATCGCCGTCGGCCACTAATAGTGAC
LOC_Os10g40600
Os.3048.2.S1_x_at--648--10071Chr10:21428569..21428593 (25 bp)
TAGTGACCGATCGATGCGTCAGCAT
LOC_Os10g40600
Os.3048.2.S1_x_at--457--5671Chr10:21428544..21428568 (25 bp)
GACATACGCAAGCTAGCTACCAGTT
LOC_Os10g40600
Os.3048.2.S1_x_at--632--9971Chr10:21428527..21428551 (25 bp)
TACCAGTTAGCTGCACGCGTCGTGT
LOC_Os10g40600
Os.3048.2.S1_x_at--894--5091Chr10:21428515..21428539 (25 bp)
GCACGCGTCGTGTATGTACGTCGTC
LOC_Os10g40600
Os.3048.2.S1_x_at--1156--6911Chr10:21428500..21428524 (25 bp)
GTACGTCGTCCTTGTAATAACTTTG
LOC_Os10g40600
Os.3048.2.S1_x_at--819--3651Chr10:21428406..21428430 (25 bp)
CTTCTTCGTGTATTGTATTCGACGT
LOC_Os10g40600
Os.3048.2.S1_x_at--725--8751Chr10:21428393..21428417 (25 bp)
TGTATTCGACGTATTTCGCCGGGTA
LOC_Os10g40600
Os.3048.2.S1_x_at--365--10631Chr10:21428379..21428403 (25 bp)
TTCGCCGGGTATAATTTGGGTGTAT
LOC_Os10g40600
Os.3048.2.S1_x_at--838--7711Chr10:21428362..21428386 (25 bp)
GGGTGTATTCTCATCGCACGTATAA
LOC_Os10g40600
Os.3048.2.S1_x_at--934--311Chr10:21428178..21428202 (25 bp)
ATACGTCTTTTATACTGATAGTGTG
LOC_Os10g40600
Target Sequence 
ATCGCCGTCGGCCACTAATAGTGACCGATCGATGCGTCAGCATGACATACGCAAGCTAGCTACCAGTTAGCTGCACGCGT
CGTGTATGTACGTCGTCCTTGTAATAACTTTGGTTTTTTCTTTTCTTGTATTTTGAATTTTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCGTGTATTGTATTCGACGTATTTCGCCGGGTATAATTTGGGTGTATTCTCATC
GCACGTATAATTAATTAATTAACCAACTACGTAATAACTACGTGGAGTTAATTAATGTGTACGTACGTGGGGTGTATGTA
GAAGGAAGATATATACGTACGTAGGGAAGGGGGAGATTTATACGGNCAATGTATAATTTGCCNACAAAGTGTATTACTGA
TGTATATGTTTATACGTCTTTTATACTGATAGTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3048.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis