Browse Element(s) Details


Os.7567.1.S1_at

Description gb:AK063684.1
DB_XREF= gi:32973702
TID=Os.7567.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7567 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-119-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-E11, full insert sequence.
FL= gb:AK063684.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4061411/11Protease inhibitor/seed storage/LTP family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40600Os.3048.1.S1_at11/1110+21428091..21432515Nitrate/chlorate transporter, putative, expressed
LOC_Os10g40600Os.3048.2.S1_x_at11/1110+21428091..21432515Nitrate/chlorate transporter, putative, expressed
LOC_Os10g40610OsAffx.30737.1.S1_at11/1110+21444523..21446845Flavin-binding monooxygenase-like family protein, expressed
LOC_Os10g40612NANA10+21447813..21448892retrotransposon protein, putative, unclassified
LOC_Os10g40614Os.7567.1.S1_at11/1110+21456448..21457347Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40620Os.23252.1.S1_at11/1110+21457941..21460559expressed protein
LOC_Os10g40620Os.21046.1.S1_at1/1110+21457941..21460559expressed protein
LOC_Os10g40620OsAffx.30891.1.S1_x_at1/1110+21457941..21460559expressed protein
LOC_Os10g40630OsAffx.20144.1.S1_at9/1110+21464775..21465436NA
LOC_Os10g40640Os.46627.1.S1_at11/1110+21469242..21472929Glycogenin, putative, expressed
LOC_Os10g40650Os.23250.1.S1_x_at11/1110+21472161..21474628expressed protein
LOC_Os10g40650OsAffx.30738.1.S1_at11/1110+21472161..21474628expressed protein
LOC_Os10g40650Os.18752.2.S1_x_at1/1110+21472161..21474628expressed protein
LOC_Os10g40660Os.54858.1.S1_at11/1110+21479586..21481267Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006869biological_processlipid transport
GO:0008289molecular_functionlipid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7567.1.S1_at--499--3511Chr10:21457015..21457039 (25 bp)
CATGTGCTCTTAATCTCTCTTTTCA
LOC_Os10g40614
Os.7567.1.S1_at--443--3751Chr10:21457031..21457055 (25 bp)
CTCTTTTCATCCACATTTCGCATTA
LOC_Os10g40614
Os.7567.1.S1_at--828--9791Chr10:21457114..21457138 (25 bp)
TAAGCTAGTGTCGTCGTTGTTGCGT
LOC_Os10g40614
Os.7567.1.S1_at--304--6651Chr10:21457132..21457156 (25 bp)
GTTGCGTGCCAAGGTTTTAGGTTAG
LOC_Os10g40614
Os.7567.1.S1_at--516--6651Chr10:21457163..21457187 (25 bp)
GTTGATTGCTAGCTAATGTCCTACT
LOC_Os10g40614
Os.7567.1.S1_at--471--2971Chr10:21457177..21457201 (25 bp)
AATGTCCTACTAGCATTGAGTTGTA
LOC_Os10g40614
Os.7567.1.S1_at--1022--6911Chr10:21457199..21457223 (25 bp)
GTAGGTACCAGTTTGATTGCTTTCC
LOC_Os10g40614
Os.7567.1.S1_at--1137--6571Chr10:21457213..21457237 (25 bp)
GATTGCTTTCCTTTGATGCGTATTT
LOC_Os10g40614
Os.7567.1.S1_at--73--8811Chr10:21457237..21457261 (25 bp)
TGTTCGCTCGCTGGGTAATTGTCAC
LOC_Os10g40614
Os.7567.1.S1_at--261--1731Chr10:21457260..21457284 (25 bp)
ACCAGTTTGTGTGTGTTGTAATGTC
LOC_Os10g40614
Os.7567.1.S1_at--172--10411Chr10:21457290..21457314 (25 bp)
TTAGTTTCACTGTTTCGGATTCAAA
LOC_Os10g40614
Target Sequence 
CATGTGCTCTTAATCTCTCTTTTCATCCACATTTCGCATTAATTAATTACCATGCATTTTACCTATTACAATCTTCTAAT
TTGGGAGTCATTTAGTTAATAAGCTAGTGTCGTCGTTGTTGCGTGCCAAGGTTTTAGGTTAGTTGTGTGTTGATTGCTAG
CTAATGTCCTACTAGCATTGAGTTGTAGGTACCAGTTTGATTGCTTTCCTTTGATGCGTATTTGTTCGCTCGCTGGGTAA
TTGTCACCAGTTTGTGTGTGTTGTAATGTCTTGTTTTAGTTTCACTGTTTCGGATTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7567.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis