Browse Element(s) Details


OsAffx.30738.1.S1_at

Description tigr:9638.m03690
TID=OsAffx.30738.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4065011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40612NANA10+21447813..21448892retrotransposon protein, putative, unclassified
LOC_Os10g40614Os.7567.1.S1_at11/1110+21456448..21457347Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40620Os.23252.1.S1_at11/1110+21457941..21460559expressed protein
LOC_Os10g40620Os.21046.1.S1_at1/1110+21457941..21460559expressed protein
LOC_Os10g40620OsAffx.30891.1.S1_x_at1/1110+21457941..21460559expressed protein
LOC_Os10g40630OsAffx.20144.1.S1_at9/1110+21464775..21465436NA
LOC_Os10g40640Os.46627.1.S1_at11/1110+21469242..21472929Glycogenin, putative, expressed
LOC_Os10g40650Os.23250.1.S1_x_at11/1110+21472161..21474628expressed protein
LOC_Os10g40650OsAffx.30738.1.S1_at11/1110+21472161..21474628expressed protein
LOC_Os10g40650Os.18752.2.S1_x_at1/1110+21472161..21474628expressed protein
LOC_Os10g40660Os.54858.1.S1_at11/1110+21479586..21481267Zinc finger, C2H2 type family protein, expressed
LOC_Os10g40680NANA10+21492586..21494013expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30738.1.S1_at--594--5731Chr10:21472714..21472738 (25 bp)
GACTGATCTATCTTTACTGTATCTG
LOC_Os10g40650
OsAffx.30738.1.S1_at--199--3191Chr10:21472686..21472710 (25 bp)
CAATCATGGTTGCTGCAGGCATACA
LOC_Os10g40650
OsAffx.30738.1.S1_at--451--3491Chr10:21472671..21472695 (25 bp)
CAGGCATACATTGCTGCTGACACAA
LOC_Os10g40650
OsAffx.30738.1.S1_at--460--2491Chr10:21472546..21472570 (25 bp)
AACAGCTTGCTGAATTCGGTTTCCT
LOC_Os10g40650
OsAffx.30738.1.S1_at--1--2751Chr10:21472498..21472522 (25 bp)
AAGAACGGTTCCCTCTCGAGCATAG
LOC_Os10g40650
OsAffx.30738.1.S1_at--602--1531Chr10:21472480..21472504 (25 bp)
AGCATAGTCTGCAACGAGTCCATCA
LOC_Os10g40650
OsAffx.30738.1.S1_at--317--2291Chr10:21472418..21472442 (25 bp)
AAATGCGTACCCGAAGATTGCCAGA
LOC_Os10g40650
OsAffx.30738.1.S1_at--346--5351Chr10:21472406..21472430 (25 bp)
GAAGATTGCCAGAACCCTCACGATA
LOC_Os10g40650
OsAffx.30738.1.S1_at--195--7851Chr10:21472374..21472398 (25 bp)
GGTACCACGGGAATGCCATGACGAA
LOC_Os10g40650
OsAffx.30738.1.S1_at--1109--4831Chr10:21472333..21472357 (25 bp)
GCTAACCAGGGCGTGAGCACAGCAA
LOC_Os10g40650
OsAffx.30738.1.S1_at--571--1531Chr10:21472180..21472204 (25 bp)
AGCATGGCCACGATTGCAGACATCT
LOC_Os10g40650
Target Sequence 
GACTGATCTATCTTTACTGTATCTGCATCAATCATGGTTGCTGCAGGCATACATTGCTGCTGACACAAAGTAGAATGCCT
GAGCCAAAATCGTCAGAATGAATCAAGAATTAGAGAATGTGATTCTGTCCAAATGAAGATGCATCTGAATCTGTACAAAT
TGAATCAAAACAGCTTGCTGAATTCGGTTTCCTGGGCCGGTTCACCAAGCCGAGGGAAGAACGGTTCCCTCTCGAGCATA
GTCTGCAACGAGTCCATCACCCTCACCAGAGACGCCCACAAGAACGGCGCAGAACAAAATGCGTACCCGAAGATTGCCAG
AACCCTCACGATACCACCATGGTACCACGGGAATGCCATGACGAAGAACATGCCAATAATAGCTAACCAGGGCGTGAGCA
CAGCAAGCAATGGAAGCAAGAAGGCATTGCTCACGAGCACTCCCAATGCCAATGCACCAAACAGGTACATGGACCAGCCC
ATGAATGGGTGAACCGTGCGTGGGATTATAAAGAACGGGATGGCATATGCAATTAGCATGGCCACGATTGCAGACATCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30738.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis