Browse Element(s) Details


OsAffx.20144.1.S1_at

Description tigr:9638.m03688
TID=OsAffx.20144.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g406309/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40610OsAffx.30737.1.S1_at11/1110+21444523..21446845Flavin-binding monooxygenase-like family protein, expressed
LOC_Os10g40612NANA10+21447813..21448892retrotransposon protein, putative, unclassified
LOC_Os10g40614Os.7567.1.S1_at11/1110+21456448..21457347Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40620Os.23252.1.S1_at11/1110+21457941..21460559expressed protein
LOC_Os10g40620Os.21046.1.S1_at1/1110+21457941..21460559expressed protein
LOC_Os10g40620OsAffx.30891.1.S1_x_at1/1110+21457941..21460559expressed protein
LOC_Os10g40630OsAffx.20144.1.S1_at9/1110+21464775..21465436NA
LOC_Os10g40640Os.46627.1.S1_at11/1110+21469242..21472929Glycogenin, putative, expressed
LOC_Os10g40650Os.23250.1.S1_x_at11/1110+21472161..21474628expressed protein
LOC_Os10g40650OsAffx.30738.1.S1_at11/1110+21472161..21474628expressed protein
LOC_Os10g40650Os.18752.2.S1_x_at1/1110+21472161..21474628expressed protein
LOC_Os10g40660Os.54858.1.S1_at11/1110+21479586..21481267Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20144.1.S1_at--381--7831Chr10:21465382..21465406 (25 bp)
GGTCACTCTCTTCCAACTCTCAAAG
LOC_Os10g40630
OsAffx.20144.1.S1_at--793--9511Chr10:21465376..21465400 (25 bp)
TCTCTTCCAACTCTCAAAGCTACTA
LOC_Os10g40630
OsAffx.20144.1.S1_at--1050--2332Chr03:31305119..31305469 (25 bp)
AAAGCTACTAGTGCACCGTACGTCA
NONE
OsAffx.20144.1.S1_at--615--2031Chr10:21465355..21465379 (25 bp)
ACTAGTGCACCGTACGTCAGTGGGC
LOC_Os10g40630
OsAffx.20144.1.S1_at--392--4991Chr10:21465349..21465373 (25 bp)
GCACCGTACGTCAGTGGGCCGGCCA
LOC_Os10g40630
OsAffx.20144.1.S1_at--795--1091Chr10:21465337..21465361 (25 bp)
AGTGGGCCGGCCAACGCCCATGATC
LOC_Os10g40630
OsAffx.20144.1.S1_at--363--2611Chr10:21465325..21465349 (25 bp)
AACGCCCATGATCGCTACTGCTACT
LOC_Os10g40630
OsAffx.20144.1.S1_at--607--711Chr10:21465318..21465342 (25 bp)
ATGATCGCTACTGCTACTTGGCACT
LOC_Os10g40630
OsAffx.20144.1.S1_at--403--4851Chr10:21465312..21465336 (25 bp)
GCTACTGCTACTTGGCACTTGCAGA
LOC_Os10g40630
OsAffx.20144.1.S1_at--428--4851NONE
GCTACTTGGCACTTGCAGAAACGTC
NONE
OsAffx.20144.1.S1_at--315--8511NONE
TGGCACTTGCAGAAACGTCGAAGGC
NONE
Target Sequence 
GGTCACTCTCTTCCAACTCTCAAAGCTACTAGTGCACCGTACGTCAGTGGGCCGGCCAACGCCCATGATCGCTACTGCTA
CTTGGCACTTGCAGAAACGTCGAAGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20144.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis