Browse Element(s) Details


Os.23252.1.S1_at

Description gb:AK120846.1
DB_XREF= gi:37990469
TID=Os.23252.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23252 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBb0014I11.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023022N01, full insert sequence.
FL= gb:AK120846.1 gb:AK059811.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4062011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40610OsAffx.30737.1.S1_at11/1110+21444523..21446845Flavin-binding monooxygenase-like family protein, expressed
LOC_Os10g40612NANA10+21447813..21448892retrotransposon protein, putative, unclassified
LOC_Os10g40614Os.7567.1.S1_at11/1110+21456448..21457347Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40620Os.23252.1.S1_at11/1110+21457941..21460559expressed protein
LOC_Os10g40620Os.21046.1.S1_at1/1110+21457941..21460559expressed protein
LOC_Os10g40620OsAffx.30891.1.S1_x_at1/1110+21457941..21460559expressed protein
LOC_Os10g40630OsAffx.20144.1.S1_at9/1110+21464775..21465436NA
LOC_Os10g40640Os.46627.1.S1_at11/1110+21469242..21472929Glycogenin, putative, expressed
LOC_Os10g40650Os.23250.1.S1_x_at11/1110+21472161..21474628expressed protein
LOC_Os10g40650OsAffx.30738.1.S1_at11/1110+21472161..21474628expressed protein
LOC_Os10g40650Os.18752.2.S1_x_at1/1110+21472161..21474628expressed protein
LOC_Os10g40660Os.54858.1.S1_at11/1110+21479586..21481267Zinc finger, C2H2 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23252.1.S1_at--412--7231Chr10:21458497..21458521 (25 bp)
GTCCCGGCGATTGCAACTTCTGGTT
LOC_Os10g40620
Os.23252.1.S1_at--993--2051Chr10:21458482..21458506 (25 bp)
ACTTCTGGTTGGTGTTTCTGATCAT
LOC_Os10g40620
Os.23252.1.S1_at--557--3191Chr10:21458429..21458453 (25 bp)
CAATCACTCGCCCACTTATATAAAT
LOC_Os10g40620
Os.23252.1.S1_at--707--2951Chr10:21458386..21458410 (25 bp)
AATGCTAGTACCAGCGTCACGGACT
LOC_Os10g40620
Os.23252.1.S1_at--1010--8911Chr10:21458362..21458386 (25 bp)
TGACCGGTGATCTGAGCCGACATTA
LOC_Os10g40620
Os.23252.1.S1_at--320--2331Chr10:21458262..21458286 (25 bp)
AAAGATACATGGTCCCCTGGTTGGC
LOC_Os10g40620
Os.23252.1.S1_at--1038--7791Chr10:21458236..21458260 (25 bp)
GGTCGCATTACTTTCCCAGGTAAAT
LOC_Os10g40620
Os.23252.1.S1_at--1130--7591Chr10:21458195..21458219 (25 bp)
GGGCACTAATTTGTTGGTCTTTTCA
LOC_Os10g40620
Os.23252.1.S1_at--68--191Chr10:21458097..21458121 (25 bp)
ATTTAAGGGCGTTGGTGTTCATGTT
LOC_Os10g40620
Os.23252.1.S1_at--26--171Chr10:21457978..21458002 (25 bp)
ATTATTCCTTCAAGGGCTTGTCCTT
LOC_Os10g40620
Os.23252.1.S1_at--1042--8251Chr10:21457964..21457988 (25 bp)
GGCTTGTCCTTTGAGTTACCCAAGA
LOC_Os10g40620
Target Sequence 
GTCCCGGCGATTGCAACTTCTGGTTGGTGTTTCTGATCATCAAAGTACACGGAGATGGAGCAGAGTGTCAATCACTCGCC
CACTTATATAAATTAAGATGCAAAGAGTACTAATGCTAGTACCAGCGTCACGGACTGACCGGTGATCTGAGCCGACATTA
CTGANTGTNTTTTATNGTATNNATGTTNCGTGCCTGAANACAAGTAANATTAAANACAAAAAATTAGACGATGACCNAGA
AATTAAAGATACATGGTCCCCTGGTTGGCCGGTCGCATTACTTTCCCAGGTAAATGTTCAGTTTGTTGGAAGGGCACTAA
TTTGTTGGTCTTTTCATGTTCATGAATGTTAAGTTGATGGATGGATGTAATTCGGTTTGATTAACAGTGTATATATGTAT
CTTACGTATATTTAAGGGCGTTGGTGTTCATGTTGGTGTGTAGAATTGAATATCACAGTTTGTGGATAGAGATTGAGTTA
TTGAGGTGTATGCAATATGCATATTCAGTGTTCACAAACTGTATATCAATTATTCCTTCAAGGGCTTGTCCTTTGAGTTA
CCCAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23252.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis