Browse Element(s) Details


Os.46627.1.S1_at

Description gb:AB164463.1
DB_XREF= gi:45126768
GEN=OsGGT
TID=Os.46627.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46627 (NCBI UniGene Cluster)
DEF=Oryza sativa (indica cultivar-group) OsGGT mRNA for putative glycogenin glucosyltransferase, complete cds.
PROD=putative glycogenin glucosyltransferase
FL= gb:AB164463.1 gb:AK120349.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4064011/11Glycogenin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40610OsAffx.30737.1.S1_at11/1110+21444523..21446845Flavin-binding monooxygenase-like family protein, expressed
LOC_Os10g40612NANA10+21447813..21448892retrotransposon protein, putative, unclassified
LOC_Os10g40614Os.7567.1.S1_at11/1110+21456448..21457347Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40620Os.23252.1.S1_at11/1110+21457941..21460559expressed protein
LOC_Os10g40620Os.21046.1.S1_at1/1110+21457941..21460559expressed protein
LOC_Os10g40620OsAffx.30891.1.S1_x_at1/1110+21457941..21460559expressed protein
LOC_Os10g40630OsAffx.20144.1.S1_at9/1110+21464775..21465436NA
LOC_Os10g40640Os.46627.1.S1_at11/1110+21469242..21472929Glycogenin, putative, expressed
LOC_Os10g40650Os.23250.1.S1_x_at11/1110+21472161..21474628expressed protein
LOC_Os10g40650OsAffx.30738.1.S1_at11/1110+21472161..21474628expressed protein
LOC_Os10g40650Os.18752.2.S1_x_at1/1110+21472161..21474628expressed protein
LOC_Os10g40660Os.54858.1.S1_at11/1110+21479586..21481267Zinc finger, C2H2 type family protein, expressed
LOC_Os10g40680NANA10+21492586..21494013expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0016051biological_processcarbohydrate biosynthesis
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
GO:0016758molecular_functiontransferase activity, transferring hexosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46627.1.S1_at--360--3271Chr10:21472120..21472144 (25 bp)
CAAAACTGTGCTATAACCGGCGGCC
LOC_Os10g40640
Os.46627.1.S1_at--12--771Chr10:21472182..21472206 (25 bp)
ATGTCTGCAATCGTGGCCATGCTAA
LOC_Os10g40640
Os.46627.1.S1_at--941--251Chr10:21472211..21472235 (25 bp)
ATATGCCATCCCGTTCTTTATAATC
LOC_Os10g40640
Os.46627.1.S1_at--796--8591Chr10:21472263..21472287 (25 bp)
TGGTCCATGTACCTGTTTGGTGCAT
LOC_Os10g40640
Os.46627.1.S1_at--968--9671Chr10:21472342..21472366 (25 bp)
TCACGCCCTGGTTAGCTATTATTGG
LOC_Os10g40640
Os.46627.1.S1_at--229--4951Chr10:21472383..21472407 (25 bp)
GCATTCCCGTGGTACCATGGTGGTA
LOC_Os10g40640
Os.46627.1.S1_at--554--10151Chr10:21472406..21472430 (25 bp)
TATCGTGAGGGTTCTGGCAATCTTC
LOC_Os10g40640
Os.46627.1.S1_at--521--3071Chr10:21472424..21472448 (25 bp)
AATCTTCGGGTACGCATTTTGTTCT
LOC_Os10g40640
Os.46627.1.S1_at--527--7391Chr10:21472479..21472503 (25 bp)
GTGATGGACTCGTTGCAGACTATGC
LOC_Os10g40640
Os.46627.1.S1_at--386--5771Chr10:21472645..21472669 (25 bp)
GACGATTTTGGCTCAGGCATTCTAC
LOC_Os10g40640
Os.46627.1.S1_at--203--8291Chr10:21472660..21472684 (25 bp)
GGCATTCTACTTTGTGTCAGCAGCA
LOC_Os10g40640
Target Sequence 
CAAAACTGTGCTATAACCGGCGGCCCGAGAAGCAAAATGCCATGGTGCAGGGGCTGATCAAGATGTCTGCAATCGTGGCC
ATGCTAATTGCATATGCCATCCCGTTCTTTATAATCCCACGCACGGTTCACCCATTCATGGGCTGGTCCATGTACCTGTT
TGGTGCATTGGCATTGGGAGTGCTCGTGAGCAATGCCTTCTTGCTTCCATTGCTTGCTGTGCTCACGCCCTGGTTAGCTA
TTATTGGCATGTTCTTCGTCATGGCATTCCCGTGGTACCATGGTGGTATCGTGAGGGTTCTGGCAATCTTCGGGTACGCA
TTTTGTTCTGCGCCGTTCTTGTGGGCGTCTCTGGTGAGGGTGATGGACTCGTTGCAGACTATGCTCGAGAGGGAACCGTT
CTTCCCTCGGCTTGGTGAACCGGCCCAGGAAACCGAATTCAGCAAGCTGTTTTGATTCAATTTGTACAGATTCAGATGCA
TCTTCATTTGGACAGAATCACATTCTCTAATTCTTGATTCATTCTGACGATTTTGGCTCAGGCATTCTACTTTGTGTCAG
CAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis