Browse Element(s) Details


Os.23250.1.S1_x_at

Description gb:AK068935.1
DB_XREF= gi:32978959
TID=Os.23250.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23250 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0014I11.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023003I12, full insert sequence.
FL= gb:AK068935.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4065011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40612NANA10+21447813..21448892retrotransposon protein, putative, unclassified
LOC_Os10g40614Os.7567.1.S1_at11/1110+21456448..21457347Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40620Os.23252.1.S1_at11/1110+21457941..21460559expressed protein
LOC_Os10g40620Os.21046.1.S1_at1/1110+21457941..21460559expressed protein
LOC_Os10g40620OsAffx.30891.1.S1_x_at1/1110+21457941..21460559expressed protein
LOC_Os10g40630OsAffx.20144.1.S1_at9/1110+21464775..21465436NA
LOC_Os10g40640Os.46627.1.S1_at11/1110+21469242..21472929Glycogenin, putative, expressed
LOC_Os10g40650Os.23250.1.S1_x_at11/1110+21472161..21474628expressed protein
LOC_Os10g40650OsAffx.30738.1.S1_at11/1110+21472161..21474628expressed protein
LOC_Os10g40650Os.18752.2.S1_x_at1/1110+21472161..21474628expressed protein
LOC_Os10g40660Os.54858.1.S1_at11/1110+21479586..21481267Zinc finger, C2H2 type family protein, expressed
LOC_Os10g40680NANA10+21492586..21494013expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23250.1.S1_x_at--756--2271Chr10:21473455..21473478 (24 bp)
AAATCTGATGCGTATTCTGCCATGA
LOC_Os10g40650
Os.23250.1.S1_x_at--765--231Chr10:21473329..21473353 (25 bp)
ATATTTCTCGTCATCAGGTCAAGGG
LOC_Os10g40650
Os.23250.1.S1_x_at--1066--5411Chr10:21473226..21473250 (25 bp)
GAAGCCGTGTACGTTCTAATCTCTC
LOC_Os10g40650
Os.23250.1.S1_x_at--406--5031Chr10:21473189..21473213 (25 bp)
GCAGACTTATCACAACAGCGTTCTT
LOC_Os10g40650
Os.23250.1.S1_x_at--651--6631Chr10:21473164..21473188 (25 bp)
GTTGTTCTACCAGCTAACTTCAATT
LOC_Os10g40650
Os.23250.1.S1_x_at--110--3631Chr10:21473115..21473139 (25 bp)
CTTGTTCGCCGTACTCATATGATTA
LOC_Os10g40650
Os.23250.1.S1_x_at--756--6311Chr10:21473079..21473103 (25 bp)
GATGACTTGTTGACATTCTGCCAAT
LOC_Os10g40650
Os.23250.1.S1_x_at--984--6091Chr10:21472998..21473022 (25 bp)
GATGTAAATCGTGCAACTTGCCCGA
LOC_Os10g40650
Os.23250.1.S1_x_at--874--9831Chr10:21472970..21472994 (25 bp)
TAAATCTCGTGGTCAGTTCTGAGTC
LOC_Os10g40650
Os.23250.1.S1_x_at--888--6711Chr10:21472955..21472979 (25 bp)
GTTCTGAGTCTGGATTTCGTTGCTA
LOC_Os10g40650
Os.23250.1.S1_x_at--651--9351Chr10:21472939..21472963 (25 bp)
TCGTTGCTAGTAGACTTCTTGTTCA
LOC_Os10g40650
Target Sequence 
AAATCTGATGCGTATTCTGCCATGATGATTTTGGAGAGATATTTCTCGTCATCAGGTCAAGGGGCTAAGATTGTTCTTCC
TAAACAACCACAACTACAGAGCAAATTGTTAGAGAAGTCAAGGCAAGATGCTCAAGTTTAGGAAGCCGTGTACGTTCTAA
TCTCTCCAACCATAGATAGCAGACTTATCACAACAGCGTTCTTGTTGTTCTACCAGCTAACTTCAATTGCGTAGTACAGT
ATTTTATATAGTCTTGTTCGCCGTACTCATATGATTAAACGAAGGGAGGATGACTTGTTGACATTCTGCCAATTTATCAA
AATTACAAGTTTCGATCAAAATTCTTCATTTGCTGTTTCAAATCAACCAGATGTAAATCGTGCAACTTGCCCGATGATAA
ATCTCGTGGTCAGTTCTGAGTCTGGATTTCGTTGCTAGTAGACTTCTTGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23250.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis